Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SMSK321_RS08425 Genome accession   NZ_AEDT01000026
Coordinates   14260..15186 (+) Length   308 a.a.
NCBI ID   WP_000103691.1    Uniprot ID   A0A3R9MHI7
Organism   Streptococcus mitis SK321     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 9260..20186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMSK321_RS08415 (SMSK321_1106) amiA 10718..12697 (+) 1980 WP_000749707.1 peptide ABC transporter substrate-binding protein Regulator
  SMSK321_RS08420 (SMSK321_1107) amiC 12764..14260 (+) 1497 WP_000759912.1 ABC transporter permease Regulator
  SMSK321_RS08425 (SMSK321_1108) amiD 14260..15186 (+) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  SMSK321_RS08430 (SMSK321_1109) amiE 15195..16262 (+) 1068 WP_000159549.1 ABC transporter ATP-binding protein Regulator
  SMSK321_RS08435 (SMSK321_1110) amiF 16273..17199 (+) 927 WP_001291303.1 ATP-binding cassette domain-containing protein Regulator
  SMSK321_RS08440 (SMSK321_1111) - 17651..18529 (-) 879 WP_001049297.1 LysR family transcriptional regulator -
  SMSK321_RS0102495 (SMSK321_1112) - 18657..19007 (-) 351 WP_000208712.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34541.57 Da        Isoelectric Point: 9.6860

>NTDB_id=64508 SMSK321_RS08425 WP_000103691.1 14260..15186(+) (amiD) [Streptococcus mitis SK321]
MSTIDKEKFQFVKRDDFASEAIDAPAYSYWGSVFRQFMKKKSTVVMLGILVAIILMSFIYPMFSKFDFNDVSKVNDFSAR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=64508 SMSK321_RS08425 WP_000103691.1 14260..15186(+) (amiD) [Streptococcus mitis SK321]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAGCCATTGATGCGCCAGCTTA
TTCATACTGGGGTTCAGTGTTTAGACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCTATCA
TTTTGATGAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTTAGCAAAGTAAACGACTTTAGTGCTCGT
TATATCAAGCCAAATGCTGAGCATTGGTTCGGTACAGATAGTAACGGTAAATCTCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCTATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGAA
TTTCAAAATCAGTTGACCGCGTGATGATGGAAGTTTATAACGTCATCTCAAACATCCCATCTCTTTTGATTGTTATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGTGTAACAACATGGATTGGGATTGCCTTCAT
GATTCGTGTGCAAATCTTGCGTTACCGTGATTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAACATCATGCCACAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCATTCTTCGGTCTTGGATTACCGATTACCGTGCCAAGTTTGGGGCGTTTGATTTCAGATTATTC
ACAAAACGTAACAACAAATGCTTACTTGTTCTGGATTCCATTGACAACTCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9MHI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.792

100

0.828
  amiD Streptococcus thermophilus LMG 18311

81.494

100

0.815
  amiD Streptococcus thermophilus LMD-9

81.494

100

0.815

Multiple sequence alignment