Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SMSK321_RS08435 Genome accession   NZ_AEDT01000026
Coordinates   16273..17199 (+) Length   308 a.a.
NCBI ID   WP_001291303.1    Uniprot ID   -
Organism   Streptococcus mitis SK321     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 11273..22199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMSK321_RS08420 (SMSK321_1107) amiC 12764..14260 (+) 1497 WP_000759912.1 ABC transporter permease Regulator
  SMSK321_RS08425 (SMSK321_1108) amiD 14260..15186 (+) 927 WP_000103691.1 oligopeptide ABC transporter permease OppC Regulator
  SMSK321_RS08430 (SMSK321_1109) amiE 15195..16262 (+) 1068 WP_000159549.1 ABC transporter ATP-binding protein Regulator
  SMSK321_RS08435 (SMSK321_1110) amiF 16273..17199 (+) 927 WP_001291303.1 ATP-binding cassette domain-containing protein Regulator
  SMSK321_RS08440 (SMSK321_1111) - 17651..18529 (-) 879 WP_001049297.1 LysR family transcriptional regulator -
  SMSK321_RS0102495 (SMSK321_1112) - 18657..19007 (-) 351 WP_000208712.1 helix-turn-helix domain-containing protein -
  SMSK321_RS08445 (SMSK321_1113) - 19366..20991 (+) 1626 WP_000123927.1 malolactic enzyme -
  SMSK321_RS08450 (SMSK321_1114) - 21075..22022 (+) 948 WP_000402218.1 AEC family transporter -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34821.90 Da        Isoelectric Point: 6.7096

>NTDB_id=64510 SMSK321_RS08435 WP_001291303.1 16273..17199(+) (amiF) [Streptococcus mitis SK321]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFEGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHHLFKDEEERKEKVKNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWTNQAELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=64510 SMSK321_RS08435 WP_001291303.1 16273..17199(+) (amiF) [Streptococcus mitis SK321]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCAGGAAGTGGGAAAACAACGATTGGTCGTG
CTATCATCGGTCTCAATGATACAAGTAATGGAGATATCATTTTTGAAGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCAGAATTGATTCGTCGTATCCAGATGATTTTTCAAGATCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCATCATCTGTTCAAGGATGAAGAAGAACGTAAAGAGAAAGTTAAAAATATTA
TCCGTGAAGTGGGCCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGTGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCGGATGAGCCCATTTCAGCCTTGGACGTTTCTGTGCGTGC
TCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAACTTGGTTTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCTGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAGGCCTTGCTTTCAGCGGTTCCAATTCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAACCATCCATGGTTGAAATCCGTCCAGGTCACTATGTTT
GGACTAACCAAGCCGAATTGGCACGTTACCAAAAAGGATTAAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.902

99.026

0.851
  amiF Streptococcus salivarius strain HSISS4

85.902

99.026

0.851
  amiF Streptococcus thermophilus LMD-9

85.574

99.026

0.847

Multiple sequence alignment