Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IHC91_RS01940 Genome accession   NZ_CP090489
Coordinates   390241..391467 (-) Length   408 a.a.
NCBI ID   WP_106338472.1    Uniprot ID   A0AAD3ZVT0
Organism   Photobacterium damselae subsp. damselae strain AS-15-3942-8     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 385241..396467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHC91_RS01915 (IHC91_01915) mutT 387037..387459 (-) 423 WP_068968360.1 8-oxo-dGTP diphosphatase MutT -
  IHC91_RS01920 (IHC91_01920) yacG 387554..387763 (-) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  IHC91_RS01925 (IHC91_01925) zapD 387772..388509 (-) 738 WP_106261927.1 cell division protein ZapD -
  IHC91_RS01930 (IHC91_01930) coaE 388577..389179 (-) 603 WP_138222159.1 dephospho-CoA kinase -
  IHC91_RS01935 (IHC91_01935) pilD 389181..390059 (-) 879 WP_068945537.1 prepilin peptidase Machinery gene
  IHC91_RS01940 (IHC91_01940) pilC 390241..391467 (-) 1227 WP_106338472.1 type II secretion system F family protein Machinery gene
  IHC91_RS01945 (IHC91_01945) pilB 391533..393224 (-) 1692 WP_237029686.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IHC91_RS01950 (IHC91_01950) - 393225..393719 (-) 495 WP_237029687.1 pilin -
  IHC91_RS01955 (IHC91_01955) ampD 394238..394816 (+) 579 WP_138222126.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  IHC91_RS01960 (IHC91_01960) pdhR 395176..395949 (+) 774 WP_005297609.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45016.15 Da        Isoelectric Point: 10.0330

>NTDB_id=642828 IHC91_RS01940 WP_106338472.1 390241..391467(-) (pilC) [Photobacterium damselae subsp. damselae strain AS-15-3942-8]
MAQLAANKIRYYRWRGVNQGGKKITGVTLGFQEQEVRAQLTEQMIQVKKIKRTNPSTLDKIRNQMKSSDVTAITRQLATM
IESGVPIVQALKLMASSHHKAEVRAVLTQVNTQVEAGASLSKALKSSSPLFDNFYCDLVATGEETGYLGQVFVRLATYRE
KSEAMRKKVIKAMIYPSMVMLTAISVTILMLVFVIPQFAAIFGSFGAELPWFTRQVLKASDFLINYGGYLAVGLLLALVL
YRYSYKRSYSFRLRMARLSLRLPIIGNVVLKATIARFARTLATTFSAGIPLLTGLQSAGKTAGNLHIEEAIMEAHTSAAA
GMPLYLSLRQCNVFPELMLQMTMIGEESGSLDDMLNKMASLYENDVDNIVDNLGQILEPLIIIVLGVLIGGLLVAMYMPI
FTLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=642828 IHC91_RS01940 WP_106338472.1 390241..391467(-) (pilC) [Photobacterium damselae subsp. damselae strain AS-15-3942-8]
ATGGCACAGTTAGCCGCTAATAAAATCCGTTATTATCGCTGGCGAGGAGTAAACCAAGGCGGCAAGAAAATCACAGGCGT
AACCTTAGGTTTTCAAGAACAAGAAGTGCGAGCGCAACTGACCGAGCAGATGATCCAAGTAAAAAAGATCAAGCGCACCA
ATCCCTCTACGCTCGACAAAATCCGCAATCAGATGAAAAGCAGCGATGTAACGGCTATTACTCGCCAACTTGCGACCATG
ATCGAATCTGGAGTTCCGATTGTACAAGCTCTGAAGCTAATGGCCAGTAGCCACCATAAAGCAGAAGTGCGTGCGGTATT
AACTCAGGTCAACACCCAAGTAGAAGCCGGAGCCTCACTGTCAAAAGCACTAAAATCAAGCTCACCACTGTTTGATAATT
TCTACTGTGACTTAGTCGCAACCGGGGAAGAAACCGGGTATCTTGGTCAAGTATTTGTTCGCTTAGCCACGTATCGAGAA
AAAAGCGAGGCGATGCGAAAAAAAGTGATTAAGGCGATGATTTACCCATCCATGGTGATGCTAACGGCCATCAGTGTCAC
TATCTTAATGCTGGTCTTTGTTATCCCTCAATTTGCCGCTATTTTTGGCAGTTTTGGCGCAGAACTCCCTTGGTTTACTC
GCCAAGTATTAAAAGCCTCGGATTTCCTAATTAACTATGGGGGATACTTAGCTGTAGGTTTGCTGCTTGCACTCGTGCTT
TATCGTTATAGCTATAAACGGTCCTATTCGTTTCGGTTACGTATGGCTAGGTTAAGCTTACGCCTGCCCATTATCGGTAA
CGTTGTACTCAAAGCAACTATTGCCCGTTTTGCTCGAACCCTTGCGACCACTTTTAGTGCCGGTATTCCCCTACTAACAG
GGCTACAGTCGGCTGGTAAAACCGCAGGCAACTTACATATAGAAGAGGCCATTATGGAAGCACATACCAGTGCAGCGGCG
GGGATGCCACTCTATTTATCTTTGCGCCAATGCAATGTTTTTCCAGAGCTTATGTTACAGATGACCATGATCGGGGAAGA
GTCCGGCTCTCTTGACGATATGCTCAATAAAATGGCAAGCCTATATGAAAACGATGTCGATAATATCGTTGATAACCTCG
GCCAAATTTTAGAGCCTTTGATCATCATTGTGCTTGGCGTTCTGATTGGTGGTTTACTCGTGGCAATGTATATGCCGATC
TTCACCCTAATGAGCGTGATTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

55.087

98.775

0.544
  pilC Vibrio cholerae strain A1552

55.5

98.039

0.544
  pilG Neisseria meningitidis 44/76-A

42.222

99.265

0.419
  pilG Neisseria gonorrhoeae MS11

42.222

99.265

0.419
  pilC Pseudomonas stutzeri DSM 10701

40.295

99.755

0.402
  pilC Acinetobacter baumannii D1279779

40.196

100

0.402
  pilC Acinetobacter baylyi ADP1

39.798

97.304

0.387
  pilC Legionella pneumophila strain ERS1305867

38.191

97.549

0.373