Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   IHC91_RS01935 Genome accession   NZ_CP090489
Coordinates   389181..390059 (-) Length   292 a.a.
NCBI ID   WP_068945537.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain AS-15-3942-8     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 384181..395059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHC91_RS01915 (IHC91_01915) mutT 387037..387459 (-) 423 WP_068968360.1 8-oxo-dGTP diphosphatase MutT -
  IHC91_RS01920 (IHC91_01920) yacG 387554..387763 (-) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  IHC91_RS01925 (IHC91_01925) zapD 387772..388509 (-) 738 WP_106261927.1 cell division protein ZapD -
  IHC91_RS01930 (IHC91_01930) coaE 388577..389179 (-) 603 WP_138222159.1 dephospho-CoA kinase -
  IHC91_RS01935 (IHC91_01935) pilD 389181..390059 (-) 879 WP_068945537.1 prepilin peptidase Machinery gene
  IHC91_RS01940 (IHC91_01940) pilC 390241..391467 (-) 1227 WP_106338472.1 type II secretion system F family protein Machinery gene
  IHC91_RS01945 (IHC91_01945) pilB 391533..393224 (-) 1692 WP_237029686.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IHC91_RS01950 (IHC91_01950) - 393225..393719 (-) 495 WP_237029687.1 pilin -
  IHC91_RS01955 (IHC91_01955) ampD 394238..394816 (+) 579 WP_138222126.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 32515.03 Da        Isoelectric Point: 8.2918

>NTDB_id=642827 IHC91_RS01935 WP_068945537.1 389181..390059(-) (pilD) [Photobacterium damselae subsp. damselae strain AS-15-3942-8]
MAIFSYYPWLFPVFATIFGLLVGSFLNVVIYRLPIMMERQWRNECIEAFPDLIKADAKLNTDTFNLSVPRSRCPHCGHLI
SAVENIPVISWLVLKGKCKSCHAPISRRYPMIELLTAALCGTVAILFPPTWWAVAVIFFTFALIALTFIDIDKMLLPDQI
TLPLLWAGIFLALLGISPVSLQDSVIGAIAGYLCLWSVFWVFKLLTKKDGMGYGDFKLLAALGAWLGWQMLPVVVLLSSL
AGAICGIILLKVQKSDHQTPFSFGPYLAIAGWISLLWGHSIITWYVSNILGM

Nucleotide


Download         Length: 879 bp        

>NTDB_id=642827 IHC91_RS01935 WP_068945537.1 389181..390059(-) (pilD) [Photobacterium damselae subsp. damselae strain AS-15-3942-8]
ATGGCTATTTTCAGTTACTACCCTTGGCTATTTCCTGTTTTTGCTACCATTTTTGGCTTATTGGTAGGCAGCTTTCTCAA
TGTGGTGATCTACCGCTTACCCATTATGATGGAGCGTCAATGGCGTAACGAATGTATTGAAGCGTTTCCGGATTTAATCA
AAGCCGATGCGAAGTTAAATACCGACACATTTAATTTAAGCGTGCCACGTTCTCGTTGTCCTCATTGTGGTCATCTCATT
AGTGCTGTTGAAAATATCCCTGTTATTAGTTGGCTGGTATTAAAGGGAAAATGCAAATCTTGTCACGCGCCGATTAGCCG
ACGTTACCCTATGATTGAACTGTTAACTGCAGCATTGTGTGGTACGGTTGCGATCCTATTTCCGCCAACTTGGTGGGCGG
TTGCAGTAATCTTTTTCACTTTCGCCTTAATTGCTCTGACTTTTATCGATATTGATAAGATGCTACTGCCTGATCAAATC
ACCCTACCACTACTTTGGGCTGGTATTTTTCTCGCTCTATTAGGCATTAGTCCTGTATCGCTACAAGATTCTGTGATTGG
TGCAATTGCGGGTTATCTCTGTTTGTGGAGCGTCTTTTGGGTTTTTAAATTATTAACCAAAAAAGACGGTATGGGTTATG
GCGACTTTAAACTGTTAGCCGCTTTAGGAGCATGGCTTGGCTGGCAAATGCTACCTGTTGTGGTTTTGCTATCCTCTCTT
GCTGGGGCAATTTGTGGCATTATCTTATTGAAAGTACAAAAAAGTGATCACCAAACCCCATTTTCCTTTGGTCCTTATCT
TGCGATTGCTGGCTGGATCAGTCTATTGTGGGGACACTCGATCATCACTTGGTATGTCAGTAATATTTTAGGAATGTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

65.753

100

0.658
  pilD Vibrio cholerae strain A1552

62.457

100

0.627
  pilD Acinetobacter baumannii D1279779

52.045

92.123

0.479
  pilD Acinetobacter nosocomialis M2

52.045

92.123

0.479
  pilD Neisseria gonorrhoeae MS11

48.201

95.205

0.459