Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LY387_RS14210 Genome accession   NZ_CP090438
Coordinates   3132630..3133856 (+) Length   408 a.a.
NCBI ID   WP_234496130.1    Uniprot ID   -
Organism   Vibrio maritimus strain BH16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3127630..3138856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY387_RS14190 ampD 3128624..3129205 (-) 582 WP_234494571.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  LY387_RS14195 nadC 3129340..3130230 (+) 891 WP_234494573.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LY387_RS14200 - 3130492..3130923 (+) 432 WP_234494575.1 pilin -
  LY387_RS14205 pilB 3130932..3132617 (+) 1686 WP_419153450.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LY387_RS14210 pilC 3132630..3133856 (+) 1227 WP_234496130.1 type II secretion system F family protein Machinery gene
  LY387_RS14215 pilD 3133899..3134771 (+) 873 WP_234494577.1 prepilin peptidase Machinery gene
  LY387_RS14220 coaE 3134771..3135379 (+) 609 WP_128647939.1 dephospho-CoA kinase -
  LY387_RS14225 zapD 3135411..3136151 (+) 741 WP_234494579.1 cell division protein ZapD -
  LY387_RS14230 yacG 3136188..3136382 (+) 195 WP_042475855.1 DNA gyrase inhibitor YacG -
  LY387_RS14235 rplS 3136491..3136844 (-) 354 WP_112478814.1 50S ribosomal protein L19 -
  LY387_RS14240 trmD 3136887..3137636 (-) 750 WP_234494581.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LY387_RS14245 rimM 3137672..3138202 (-) 531 WP_042476112.1 ribosome maturation factor RimM -
  LY387_RS14250 rpsP 3138249..3138497 (-) 249 WP_042475851.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45089.92 Da        Isoelectric Point: 10.5078

>NTDB_id=642451 LY387_RS14210 WP_234496130.1 3132630..3133856(+) (pilC) [Vibrio maritimus strain BH16]
MVGKTEPTLSAFHWKGVNSQGKKVSGQTLAITEMEARASLKQQHIQVRKIKRRSLSTWTRLTQRINSKDITVLTRQLATM
LSTGIPIVHAIKLIADNQSKAEMKSVLSQISKGLEAGTPISRVMQFASRHFDSFYVDMVATGENSGNLAGVFQRLADYRE
KQEMLRSKVVKALIYPVMILLVSLGVTYLMLTTVVPEFESMFRGFNASLPWFTVQVLNLSRWFQENGFLVVNLVIISTLG
LKVARQRSFAIRLSTSRLALTVPIIGQVITKASIAKFSRTLSTSFSAGIPILSSIQTSAKTADNLFYQQVITSIHTDIVA
GVPIHLAMRQANAFPEMVLQMVMIGEESGTLDDMLNRVASIYEAEVDNTVDNLGKILEPFIIVFLGTLVGGLVVAMYLPI
FNLMTVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=642451 LY387_RS14210 WP_234496130.1 3132630..3133856(+) (pilC) [Vibrio maritimus strain BH16]
ATAGTGGGTAAGACTGAGCCAACACTAAGCGCATTCCACTGGAAGGGAGTGAACAGCCAAGGTAAAAAAGTCTCTGGACA
AACGCTCGCCATCACCGAGATGGAAGCTAGAGCGTCGCTAAAGCAGCAGCATATCCAAGTCCGCAAGATAAAACGCCGTA
GCCTCTCTACTTGGACAAGACTGACTCAACGCATCAATAGTAAGGACATTACGGTACTCACTCGACAACTGGCAACCATG
CTCAGCACTGGAATACCGATTGTTCACGCCATTAAGCTCATAGCAGACAATCAATCTAAAGCCGAAATGAAGTCTGTACT
ATCGCAGATCAGTAAAGGGCTTGAGGCTGGCACACCGATATCACGAGTCATGCAATTCGCTAGCCGCCATTTTGACAGTT
TTTACGTTGATATGGTCGCTACGGGAGAAAACTCAGGGAATCTAGCTGGGGTATTTCAACGCTTGGCCGATTATCGAGAA
AAACAAGAAATGCTACGCTCAAAAGTAGTAAAAGCCCTTATCTATCCTGTGATGATTCTTTTGGTCTCACTCGGAGTTAC
CTATCTCATGCTAACCACGGTAGTACCTGAGTTTGAATCCATGTTTCGCGGCTTTAATGCTTCACTGCCATGGTTTACGG
TTCAAGTCCTTAACCTATCAAGATGGTTTCAGGAAAATGGATTCTTAGTAGTTAACCTAGTCATTATTAGCACCTTAGGG
CTAAAAGTCGCGAGGCAACGAAGTTTCGCCATTCGTCTATCAACCAGCCGTTTAGCCCTTACTGTTCCTATTATCGGACA
GGTGATCACCAAGGCTTCCATTGCTAAGTTTAGCCGCACACTCTCTACTAGCTTTAGTGCGGGTATCCCAATCTTATCGA
GCATCCAAACCAGTGCAAAGACGGCGGATAACCTTTTCTACCAGCAGGTCATCACATCGATCCACACTGATATTGTTGCG
GGTGTTCCTATCCACTTAGCGATGCGGCAAGCCAATGCTTTCCCAGAAATGGTGTTGCAGATGGTGATGATAGGTGAGGA
GTCTGGCACATTGGATGATATGTTGAATCGCGTTGCATCCATCTACGAAGCAGAAGTCGACAACACGGTGGATAACCTCG
GTAAGATTCTCGAGCCTTTTATCATTGTCTTTTTGGGAACCCTAGTCGGTGGACTTGTGGTCGCAATGTACCTTCCCATC
TTTAACTTAATGACAGTAATAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

66.25

98.039

0.65
  pilC Vibrio campbellii strain DS40M4

60.05

98.775

0.593
  pilC Acinetobacter baumannii D1279779

38.235

100

0.382
  pilC Legionella pneumophila strain ERS1305867

38.119

99.02

0.377
  pilG Neisseria meningitidis 44/76-A

38.5

98.039

0.377
  pilC Acinetobacter baylyi ADP1

37.745

100

0.377
  pilG Neisseria gonorrhoeae MS11

38.287

97.304

0.373
  pilC Pseudomonas stutzeri DSM 10701

36.935

97.549

0.36