Detailed information NTG0642452

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LY387_RS14215
• Genome accession: NZ_CP090438
• Coordinates: 3133899..3134771 (+)
• Length: 290 a.a.
• NCBI ID: WP_234494577.1
• Uniprot ID: -
• Organism: Vibrio maritimus strain BH16
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3128899..3139771

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LY387_RS14195	nadC	3129340..3130230 (+)	891	WP_234494573.1	carboxylating nicotinate-nucleotide diphosphorylase	-
LY387_RS14200	-	3130492..3130923 (+)	432	WP_234494575.1	pilin	-
LY387_RS14205	pilB	3130932..3132617 (+)	1686	WP_419153450.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LY387_RS14210	pilC	3132630..3133856 (+)	1227	WP_234496130.1	type II secretion system F family protein	Machinery gene
LY387_RS14215	pilD	3133899..3134771 (+)	873	WP_234494577.1	prepilin peptidase	Machinery gene
LY387_RS14220	coaE	3134771..3135379 (+)	609	WP_128647939.1	dephospho-CoA kinase	-
LY387_RS14225	zapD	3135411..3136151 (+)	741	WP_234494579.1	cell division protein ZapD	-
LY387_RS14230	yacG	3136188..3136382 (+)	195	WP_042475855.1	DNA gyrase inhibitor YacG	-
LY387_RS14235	rplS	3136491..3136844 (-)	354	WP_112478814.1	50S ribosomal protein L19	-
LY387_RS14240	trmD	3136887..3137636 (-)	750	WP_234494581.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
LY387_RS14245	rimM	3137672..3138202 (-)	531	WP_042476112.1	ribosome maturation factor RimM	-
LY387_RS14250	rpsP	3138249..3138497 (-)	249	WP_042475851.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32181.45 Da
• Isoelectric Point: 7.4688

>NTDB_id=642452 LY387_RS14215 WP_234494577.1 3133899..3134771(+) (pilD) [Vibrio maritimus strain BH16]
MDVLIYYPWLFVVFATIFGLIMGSFLNVVIHRLPIMMERGWREECAEAFPEYKITPPEGQYNLSVPRSACPKCKTPIRIL
DNIPVLSWLILKGRCRHCDNKISCRYPLVELLTAAMCGIVAWYLGFSWYSIALIGMTLVLISATFIDLDTMLLPDQLTVP
LLWVGVALALLGISPVSLQDSVIGAIAGYLCLWSVYWLFKLATGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
VFGLIQLRMQSKGIDTAFPFGPYLAIAGWVSALWGSQITYAYLAITTGVY

Nucleotide

• Length: 873 bp

>NTDB_id=642452 LY387_RS14215 WP_234494577.1 3133899..3134771(+) (pilD) [Vibrio maritimus strain BH16]
ATGGACGTGTTGATTTATTATCCTTGGTTGTTCGTTGTCTTCGCCACCATTTTTGGTTTGATTATGGGCAGCTTTCTCAA
CGTCGTGATTCATCGCTTGCCTATTATGATGGAACGCGGTTGGCGAGAGGAATGTGCCGAGGCTTTTCCAGAGTACAAAA
TCACGCCCCCAGAGGGACAGTACAATCTCAGCGTGCCACGCAGTGCTTGCCCTAAGTGTAAGACGCCAATTCGCATCCTA
GATAACATCCCCGTGTTGAGCTGGCTGATCCTAAAAGGTCGCTGTCGCCACTGCGATAACAAAATAAGCTGTCGGTATCC
GTTAGTTGAACTGCTCACCGCCGCGATGTGTGGAATCGTCGCATGGTACTTGGGATTTAGCTGGTACAGTATTGCGCTTA
TTGGTATGACCTTGGTACTCATCAGTGCGACATTTATCGACCTTGATACTATGTTGCTCCCAGATCAACTCACTGTGCCA
CTGCTTTGGGTTGGGGTTGCATTAGCCTTGTTGGGTATCTCTCCTGTCTCACTTCAGGATTCTGTTATTGGCGCCATCGC
GGGTTATCTATGCCTTTGGTCTGTGTACTGGCTGTTCAAGCTAGCAACAGGTAAAGAAGGGATGGGTTATGGTGACTTTA
AACTGCTCGCAGCTCTCGGCGCATGGTTAGGCTGGCAATCTCTTCCTATGATTATTCTACTTTCTTCTGTTGTAGGCGTT
GTGTTTGGTCTCATTCAGCTTAGAATGCAGAGCAAAGGCATCGATACGGCGTTCCCATTTGGCCCTTACCTTGCCATTGC
TGGCTGGGTCAGCGCGCTGTGGGGCAGCCAGATTACGTATGCCTATCTTGCGATAACGACAGGAGTGTATTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	73.356	99.655	0.731
pilD	Vibrio cholerae strain A1552	69.097	99.31	0.686
pilD	Acinetobacter baumannii D1279779	50.376	91.724	0.462
pilD	Acinetobacter nosocomialis M2	50.376	91.724	0.462
pilD	Neisseria gonorrhoeae MS11	48.846	89.655	0.438