Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LY387_RS11925 Genome accession   NZ_CP090438
Coordinates   2634369..2634662 (-) Length   97 a.a.
NCBI ID   WP_234494281.1    Uniprot ID   -
Organism   Vibrio maritimus strain BH16     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2629369..2639662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY387_RS11900 - 2629879..2631093 (+) 1215 WP_234494276.1 pyridoxal phosphate-dependent aminotransferase -
  LY387_RS11905 yfbR 2631175..2631759 (+) 585 WP_234494277.1 5'-deoxynucleotidase -
  LY387_RS11910 - 2631775..2633127 (+) 1353 WP_234494278.1 anti-phage deoxyguanosine triphosphatase -
  LY387_RS11915 - 2633185..2633796 (-) 612 WP_234494279.1 tRNA-uridine aminocarboxypropyltransferase -
  LY387_RS11920 rrtA 2633795..2634337 (+) 543 WP_234494280.1 rhombosortase -
  LY387_RS11925 comEA 2634369..2634662 (-) 294 WP_234494281.1 ComEA family DNA-binding protein Machinery gene
  LY387_RS11930 ppiD 2634825..2636684 (-) 1860 WP_234494282.1 peptidylprolyl isomerase -
  LY387_RS11935 - 2636870..2637142 (-) 273 WP_006075676.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10472.17 Da        Isoelectric Point: 4.8279

>NTDB_id=642442 LY387_RS11925 WP_234494281.1 2634369..2634662(-) (comEA) [Vibrio maritimus strain BH16]
MKLITSIWLAIALLVAPIGSLWASEGGKLEGIEITVNINQAEPEELAELLKGVGIDKAQKIVDYREANGKFKSADDLTQV
KGIGAATVEKNRDRIIL

Nucleotide


Download         Length: 294 bp        

>NTDB_id=642442 LY387_RS11925 WP_234494281.1 2634369..2634662(-) (comEA) [Vibrio maritimus strain BH16]
ATGAAACTAATTACGTCAATCTGGCTTGCTATCGCTTTACTTGTTGCTCCTATAGGCTCTCTTTGGGCCTCTGAAGGAGG
TAAATTAGAAGGTATAGAGATAACTGTGAATATCAACCAAGCGGAGCCAGAAGAGCTTGCAGAGCTTCTCAAAGGGGTTG
GAATCGATAAGGCACAAAAGATAGTGGATTATCGAGAAGCCAACGGTAAGTTCAAGTCTGCCGACGATCTCACTCAGGTG
AAAGGTATTGGTGCTGCGACGGTCGAGAAGAATCGCGACCGTATTATTCTATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(35-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

54.639

100

0.546
  comEA Vibrio cholerae strain A1552

54.639

100

0.546
  comEA Vibrio parahaemolyticus RIMD 2210633

54.639

100

0.546
  comEA Vibrio campbellii strain DS40M4

56.818

90.722

0.515
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

49.367

81.443

0.402
  comEA Acinetobacter baylyi ADP1

51.389

74.227

0.381
  comEA/comE1 Glaesserella parasuis strain SC1401

56.452

63.918

0.361
  comEA Lactococcus lactis subsp. cremoris KW2

43.75

82.474

0.361
  comEA/celA/cilE Streptococcus mitis NCTC 12261

53.846

67.01

0.361