Detailed information NTG0641684

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: LN341_RS01185
• Genome accession: NZ_CP090364
• Coordinates: 252089..253423 (+)
• Length: 444 a.a.
• NCBI ID: WP_234203882.1
• Uniprot ID: -
• Organism: Photobacterium sp. TLY01
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 247089..258423

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LN341_RS01165 (LN341_01165)	pilM	249414..250364 (+)	951	WP_234203878.1	type IV pilus biogenesis protein PilM	-
LN341_RS01170 (LN341_01170)	-	250358..250942 (+)	585	WP_234203879.1	PilN domain-containing protein	-
LN341_RS01175 (LN341_01175)	-	250935..251555 (+)	621	WP_234203880.1	type 4a pilus biogenesis protein PilO	-
LN341_RS01180 (LN341_01180)	-	251555..252010 (+)	456	WP_234203881.1	hypothetical protein	-
LN341_RS01185 (LN341_01185)	pilQ	252089..253423 (+)	1335	WP_234203882.1	type IV pilus secretin PilQ	Machinery gene
LN341_RS01190 (LN341_01190)	aroK	253630..254148 (+)	519	WP_027250635.1	shikimate kinase AroK	-
LN341_RS01195 (LN341_01195)	aroB	254169..255242 (+)	1074	WP_234203883.1	3-dehydroquinate synthase	-
LN341_RS01200 (LN341_01200)	-	255257..256888 (+)	1632	WP_234203884.1	SPOR domain-containing protein	-
LN341_RS01205 (LN341_01205)	dam	257015..257842 (+)	828	WP_046220328.1	adenine-specific DNA-methyltransferase	-
LN341_RS01210 (LN341_01210)	-	257820..258017 (-)	198	WP_046220327.1	DUF2970 domain-containing protein	-

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 48247.67 Da
• Isoelectric Point: 4.8891

>NTDB_id=641684 LN341_RS01185 WP_234203882.1 252089..253423(+) (pilQ) [Photobacterium sp. TLY01]
MHTFYALFRLAACMISVLATAVVMAESEAVSPVNGERLSLNFQDVPVRQLLQVMADHQQHNLVVADEVQGNITLNLKDVL
WSQALDIILQMKGLTYQRHGNIMVVAPKMAMAAQASQVVRQPLHGGELKTEVILIRYAKATDLADMLAGKPGQSGLLTEY
GALHVDDRTNALVVKEVADSMDSLLAIIRALDKPVKQVQIEARIVSMNEKDITDLGVRWGMLDTHGSVTLGGSIEGNLSA
LGADSLEPDVSDYLNVNLGAQAGAARIAFQVARWGDQLLDLELSALQAEEKAEIISSPRLVTTNKKMAYIEQGTEIPYLE
ASSSGAVSVSFKKAVLSLMVTPQITPDDKLVLDLEVTQNKPGETVMTGTGEAVAIDTQRIGTQVLVDNGETIVLGGIFQH
QFSQAVRKVPLLGDIPLLGSLFRQELERDTRRELLIFVTPKILR

Nucleotide

• Length: 1335 bp

>NTDB_id=641684 LN341_RS01185 WP_234203882.1 252089..253423(+) (pilQ) [Photobacterium sp. TLY01]
ATGCATACTTTTTACGCCCTGTTCAGGCTGGCAGCCTGCATGATCTCTGTACTTGCTACTGCCGTTGTGATGGCAGAGTC
TGAGGCTGTATCTCCAGTGAATGGAGAGCGATTGTCGCTTAATTTTCAGGATGTCCCGGTGCGACAGCTATTGCAGGTGA
TGGCCGATCACCAGCAGCATAATCTGGTGGTTGCGGACGAGGTACAGGGCAACATTACCCTCAACCTTAAGGATGTGCTC
TGGTCTCAGGCGCTCGATATTATTCTCCAGATGAAAGGACTGACCTATCAACGCCACGGCAATATTATGGTGGTGGCGCC
AAAAATGGCGATGGCCGCTCAGGCGTCACAGGTTGTCCGGCAACCTTTGCACGGTGGTGAACTGAAAACCGAAGTGATTC
TAATCCGTTACGCCAAAGCCACAGATTTAGCCGACATGCTGGCAGGCAAGCCCGGCCAGTCGGGTTTGCTGACGGAATAT
GGCGCTTTGCATGTGGATGACAGAACAAACGCTCTGGTGGTTAAGGAAGTGGCAGACAGCATGGATAGTTTACTGGCTAT
CATTCGCGCGCTGGATAAACCGGTCAAGCAGGTACAGATCGAAGCGCGTATTGTCAGCATGAATGAAAAGGATATCACGG
ATCTTGGCGTACGCTGGGGAATGTTAGACACCCATGGCAGTGTGACGCTCGGGGGTTCCATTGAGGGGAATCTGTCCGCG
CTGGGGGCCGATAGTCTTGAGCCGGATGTCAGCGATTATCTCAATGTGAACCTCGGCGCTCAGGCGGGCGCGGCCAGAAT
CGCTTTTCAGGTAGCCAGGTGGGGAGATCAGTTGCTGGATCTGGAATTGTCGGCCCTGCAGGCCGAGGAGAAAGCAGAAA
TCATTTCCAGTCCCCGGCTGGTCACGACAAACAAGAAAATGGCCTATATTGAGCAGGGGACAGAGATCCCCTATCTCGAA
GCTTCGTCCAGTGGCGCAGTGTCTGTTTCTTTTAAGAAAGCTGTGCTGAGCCTGATGGTGACGCCGCAGATCACTCCGGA
TGACAAACTGGTGCTGGACCTTGAGGTCACGCAGAACAAGCCTGGCGAGACGGTCATGACAGGCACAGGGGAAGCGGTGG
CCATTGATACCCAGCGGATTGGCACTCAGGTACTGGTGGACAATGGCGAGACCATCGTGCTGGGCGGTATTTTCCAGCAC
CAGTTCAGTCAGGCGGTGCGCAAAGTCCCGCTGCTGGGAGATATTCCCTTACTGGGCAGCTTGTTCAGGCAGGAACTCGA
GCGGGATACCCGACGCGAATTATTAATTTTCGTGACCCCGAAAATCCTCCGATAG

Domains

Predicted by InterproScan.

• Secretin and TonB N terminus short domain (STN) (61-108)

• Bacterial type II and III secretion system protein (Secretin) (285-444)

• Bacterial type II/III secretion system short domain (Secretin_N) (130-197)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Vibrio campbellii strain DS40M4	58.629	95.27	0.559
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	59.375	93.694	0.556
pilQ	Vibrio cholerae strain A1552	59.375	93.694	0.556
pilQ	Legionella pneumophila strain Lp02	44.019	94.144	0.414
pilQ	Legionella pneumophila strain ERS1305867	44.019	94.144	0.414
pilQ	Acinetobacter baumannii strain A118	38.95	100	0.401
pilQ	Acinetobacter baumannii D1279779	38.95	100	0.401
pilQ	Pseudomonas aeruginosa PAK	40.547	98.874	0.401
comQ	Acinetobacter baylyi ADP1	39.686	100	0.399
comE	Haemophilus influenzae Rd KW20	41.205	93.468	0.385
comE	Haemophilus influenzae 86-028NP	40.482	93.468	0.378