Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LXF01_RS01280 Genome accession   NZ_CP090067
Coordinates   273753..274979 (-) Length   408 a.a.
NCBI ID   WP_078192563.1    Uniprot ID   -
Organism   Acinetobacter sp. SH20PTE14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 268753..279979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXF01_RS01255 (LXF01_01255) - 270077..270400 (+) 324 WP_067763086.1 pyrimidine/purine nucleoside phosphorylase -
  LXF01_RS01260 (LXF01_01260) rlmB 270578..271336 (+) 759 WP_233944930.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LXF01_RS01265 (LXF01_01265) - 271342..272262 (+) 921 WP_180156708.1 DMT family transporter -
  LXF01_RS01270 (LXF01_01270) coaE 272281..272883 (-) 603 WP_233944931.1 dephospho-CoA kinase -
  LXF01_RS01275 (LXF01_01275) pilD 272893..273753 (-) 861 WP_180156713.1 A24 family peptidase Machinery gene
  LXF01_RS01280 (LXF01_01280) pilC 273753..274979 (-) 1227 WP_078192563.1 type II secretion system F family protein Machinery gene
  LXF01_RS01285 (LXF01_01285) pilB 275012..276721 (-) 1710 WP_233944932.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LXF01_RS01290 (LXF01_01290) tpiA 276997..277788 (+) 792 WP_180084538.1 triose-phosphate isomerase -
  LXF01_RS01295 (LXF01_01295) secG 277802..278131 (+) 330 WP_180084539.1 preprotein translocase subunit SecG -
  LXF01_RS01325 (LXF01_01325) rimP 279062..279586 (+) 525 WP_078192559.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44783.15 Da        Isoelectric Point: 9.8134

>NTDB_id=640528 LXF01_RS01280 WP_078192563.1 273753..274979(-) (pilC) [Acinetobacter sp. SH20PTE14]
MAVKKAQMMPTFSYEGVDRKGAKIKGEMPSRNMALAKVTLRKQGITIKTIREKRKNILEGLMKKKVSTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPAAVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFFLIIGIGAVIA
GFMEAKKRSKAFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYETAVMKIREDVA
TGQQLQFAMRVTDKFPSMAIQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=640528 LXF01_RS01280 WP_078192563.1 273753..274979(-) (pilC) [Acinetobacter sp. SH20PTE14]
ATGGCTGTAAAAAAAGCGCAGATGATGCCAACCTTCAGTTATGAAGGCGTGGATCGCAAAGGGGCGAAAATCAAAGGGGA
AATGCCTTCGCGTAATATGGCTTTAGCTAAAGTCACTTTACGTAAGCAAGGCATCACCATTAAAACCATTCGAGAAAAAC
GTAAAAACATTCTCGAAGGCTTGATGAAAAAGAAAGTATCCACTTTGGATATCACGGTATTCACGCGCCAACTTGCAACC
ATGATGAAAGCCGGTGTACCGCTCGTTCAGGGGTTCGAAATCGTGGCGGAAGGCTTAGAAAACCCAGCCATGCGTGAAGT
GGTCTTGGGGATTAAAGGTGAAGTTGAAGGTGGCAATACATTTGCTGGTGCACTCCGTAAATATCCGCAGTATTTCGACA
ACCTATTTTGCTCATTAGTTGAATCAGGTGAACAATCGGGTGCACTTGAAACCATGTTAGACCGTGTTGCAATTTACAAA
GAAAAAAGTGAATTGCTTAAGCAAAAAATTAAAAAAGCCATGAAATACCCAGCTGCGGTAATTGTTGTCGCGGTTATTGT
GACGATCATTTTGATGGTGAAAGTAGTTCCCGTATTCCAAGACTTGTTTTCATCGTTTGGTGCAGACCTACCTGCCTTTA
CCAAAATGGTAGTGAACATGTCGGAATGGATGCAAAAATATTGGTTCTTCCTCATCATTGGAATTGGCGCTGTGATTGCT
GGTTTCATGGAAGCAAAAAAACGTAGCAAAGCTTTCAGAGACTTCTTAGACAAAGCTGCACTCAAAGCACCAATTTTTGG
GGATTTGGTTTATAAAGCAATTATTGCCCGCTATAGCCGTACCTTGGCAACCACTTTTGCTGCCGGTGTACCCTTAATTG
ATGCGCTTGAATCAACCGCAGGTGCAACCAACAACGTGGTCTATGAAACAGCGGTCATGAAAATTCGTGAAGATGTGGCG
ACTGGTCAACAGCTGCAGTTTGCGATGCGTGTCACCGATAAATTCCCATCTATGGCGATTCAAATGGTGGCTATTGGTGA
AGAATCCGGTGCCTTGGATGCTATGCTAGACAAAGTGGCAACGCATTATGAAAATGAAGTGGATAATGCCGTAGATGGCT
TAACTTCGATGATGGAACCCTTGATTATGGCGGTACTAGGTGTCCTCGTTGGTGGTCTTGTGATTGCAATGTATCTTCCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

90.196

100

0.902
  pilC Acinetobacter baylyi ADP1

84.069

100

0.841
  pilC Pseudomonas stutzeri DSM 10701

61.235

99.265

0.608
  pilC Legionella pneumophila strain ERS1305867

53.58

99.265

0.532
  pilG Neisseria gonorrhoeae MS11

45.865

97.794

0.449
  pilG Neisseria meningitidis 44/76-A

45.614

97.794

0.446
  pilC Vibrio cholerae strain A1552

42.892

100

0.429
  pilC Vibrio campbellii strain DS40M4

40.295

99.755

0.402