Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LXF01_RS01275 Genome accession   NZ_CP090067
Coordinates   272893..273753 (-) Length   286 a.a.
NCBI ID   WP_180156713.1    Uniprot ID   -
Organism   Acinetobacter sp. SH20PTE14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 267893..278753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXF01_RS01255 (LXF01_01255) - 270077..270400 (+) 324 WP_067763086.1 pyrimidine/purine nucleoside phosphorylase -
  LXF01_RS01260 (LXF01_01260) rlmB 270578..271336 (+) 759 WP_233944930.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LXF01_RS01265 (LXF01_01265) - 271342..272262 (+) 921 WP_180156708.1 DMT family transporter -
  LXF01_RS01270 (LXF01_01270) coaE 272281..272883 (-) 603 WP_233944931.1 dephospho-CoA kinase -
  LXF01_RS01275 (LXF01_01275) pilD 272893..273753 (-) 861 WP_180156713.1 A24 family peptidase Machinery gene
  LXF01_RS01280 (LXF01_01280) pilC 273753..274979 (-) 1227 WP_078192563.1 type II secretion system F family protein Machinery gene
  LXF01_RS01285 (LXF01_01285) pilB 275012..276721 (-) 1710 WP_233944932.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LXF01_RS01290 (LXF01_01290) tpiA 276997..277788 (+) 792 WP_180084538.1 triose-phosphate isomerase -
  LXF01_RS01295 (LXF01_01295) secG 277802..278131 (+) 330 WP_180084539.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31983.35 Da        Isoelectric Point: 8.0522

>NTDB_id=640527 LXF01_RS01275 WP_180156713.1 272893..273753(-) (pilD) [Acinetobacter sp. SH20PTE14]
MQELITYLINTPIALYIAVGIFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLFLHPDQPIIDETKITLSTPASTCPKCKTP
IRWYQNIPVISWIVLRGKCGSCQNSISSRYPLIELLTMICALIVVAVFGPTIQMLFGLVLTYVLIALTFIDFDTQLLPDR
YTLTLAAFGLGVNSYAIYTSATSAIWGYIIGFLCLWIVYFLFKIITGKEGMGYGDFKLLAALGAWMGPFLLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGDQIMKIYLGQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=640527 LXF01_RS01275 WP_180156713.1 272893..273753(-) (pilD) [Acinetobacter sp. SH20PTE14]
ATGCAAGAATTAATAACATATTTAATTAATACACCAATTGCGTTATATATCGCAGTTGGGATTTTTAGTCTTTGCATCGG
TAGTTTTTTGAATGTAGTAATTTACCGCACACCAAAGATGATGGAACAAGAATGGCGTACGGATTGCCAACTGTTTTTAC
ATCCGGATCAACCGATTATTGACGAAACAAAGATCACCCTGAGCACACCTGCTTCAACCTGCCCAAAATGCAAAACGCCC
ATTCGTTGGTATCAAAACATTCCAGTCATCAGTTGGATCGTGTTACGCGGAAAATGTGGAAGTTGCCAAAATTCAATCAG
TAGCCGTTATCCACTGATTGAATTACTCACCATGATCTGTGCGCTGATTGTTGTTGCAGTTTTTGGTCCAACTATCCAAA
TGCTGTTTGGTCTAGTGCTGACTTATGTATTGATTGCCTTAACATTTATTGACTTTGACACCCAACTTTTACCTGACCGC
TATACCCTTACTTTGGCTGCATTCGGGCTTGGCGTGAATAGCTATGCCATTTATACCTCTGCAACCTCAGCCATTTGGGG
GTATATCATCGGGTTCTTATGCCTATGGATTGTTTACTTTTTATTTAAAATCATAACTGGCAAAGAAGGCATGGGCTATG
GTGACTTTAAACTTTTAGCTGCGTTGGGTGCATGGATGGGCCCTTTCCTGCTCCCACTGATTGTATTACTCTCTTCACTA
GTAGGTGCAATTATTGGCATTATTTTGCTCAAAGTTCGTAAAGAAAACCAACCTTTTGCATTTGGTCCCTATATTGCCAT
CGCTGGATGGATCGCCTTTTTATGGGGTGATCAAATTATGAAAATTTATTTGGGTCAATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

79.298

99.65

0.79
  pilD Acinetobacter nosocomialis M2

79.298

99.65

0.79
  pilD Vibrio cholerae strain A1552

53.383

93.007

0.496
  pilD Vibrio campbellii strain DS40M4

52.809

93.357

0.493
  pilD Neisseria gonorrhoeae MS11

46.52

95.455

0.444