Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LS684_RS19070 Genome accession   NZ_CP089997
Coordinates   3805558..3805929 (-) Length   123 a.a.
NCBI ID   WP_233808468.1    Uniprot ID   -
Organism   Cytobacillus spongiae strain CY-G     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3800558..3810929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LS684_RS19045 (LS684_19045) - 3801225..3804044 (+) 2820 WP_233808462.1 DEAD/DEAH box helicase -
  LS684_RS19050 (LS684_19050) - 3804053..3804445 (-) 393 WP_233808463.1 hypothetical protein -
  LS684_RS19055 (LS684_19055) - 3804638..3804829 (+) 192 WP_233808464.1 helix-turn-helix transcriptional regulator -
  LS684_RS19060 (LS684_19060) - 3804804..3805037 (+) 234 WP_233808466.1 hypothetical protein -
  LS684_RS19065 (LS684_19065) - 3805353..3805556 (-) 204 WP_233811707.1 hypothetical protein -
  LS684_RS19070 (LS684_19070) ssbB 3805558..3805929 (-) 372 WP_233808468.1 single-stranded DNA-binding protein Machinery gene
  LS684_RS19075 (LS684_19075) - 3806210..3806641 (+) 432 WP_233808470.1 YwpF-like family protein -
  LS684_RS19080 (LS684_19080) - 3806695..3806871 (-) 177 WP_233808472.1 hypothetical protein -
  LS684_RS19085 (LS684_19085) - 3806871..3807269 (-) 399 WP_233808474.1 hypothetical protein -
  LS684_RS19090 (LS684_19090) - 3807431..3807757 (-) 327 WP_233808475.1 hypothetical protein -
  LS684_RS19095 (LS684_19095) fabZ 3807889..3808323 (-) 435 WP_233808477.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LS684_RS19100 (LS684_19100) - 3808417..3808695 (-) 279 WP_233808478.1 DNA-directed RNA polymerase subunit beta -
  LS684_RS19105 (LS684_19105) - 3808711..3809553 (-) 843 WP_233808479.1 flagellar hook-basal body protein -
  LS684_RS19110 (LS684_19110) - 3809587..3810426 (-) 840 WP_233808480.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 14026.94 Da        Isoelectric Point: 8.4775

>NTDB_id=639930 LS684_RS19070 WP_233808468.1 3805558..3805929(-) (ssbB) [Cytobacillus spongiae strain CY-G]
MINQVILVGRLTKDPELKMTPDGRPVANITLAVNRQYRNQQGDVDADFVQCILWRKTAENTAQYCRRGTLIGVTGKLHTR
NYDNQEGKRVFITEVIADQVRFLGKKLGSEASSQDQKEEYILE

Nucleotide


Download         Length: 372 bp        

>NTDB_id=639930 LS684_RS19070 WP_233808468.1 3805558..3805929(-) (ssbB) [Cytobacillus spongiae strain CY-G]
ATGATCAATCAAGTAATCTTAGTTGGAAGACTAACGAAAGACCCTGAGCTGAAGATGACTCCAGATGGGAGACCTGTGGC
GAATATTACGCTTGCCGTCAACAGGCAATATCGAAATCAGCAAGGAGATGTAGATGCTGATTTTGTTCAATGTATTCTAT
GGCGGAAGACGGCAGAAAATACCGCCCAATATTGCCGAAGAGGTACGTTAATAGGAGTGACGGGGAAACTACATACCCGA
AACTACGATAATCAGGAGGGGAAAAGGGTATTTATTACGGAAGTGATTGCCGATCAAGTAAGGTTTTTAGGGAAAAAACT
AGGCTCCGAGGCTAGTAGCCAGGACCAAAAGGAGGAATATATTCTTGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

86.179

0.512
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

86.179

0.504
  ssb Latilactobacillus sakei subsp. sakei 23K

50

89.431

0.447
  ssbA Streptococcus mutans UA159

38.889

100

0.398
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.66

83.74

0.374
  ssbB/cilA Streptococcus mitis NCTC 12261

44.66

83.74

0.374
  ssbB/cilA Streptococcus pneumoniae Rx1

43.689

83.74

0.366
  ssbB/cilA Streptococcus pneumoniae D39

43.689

83.74

0.366
  ssbB/cilA Streptococcus pneumoniae R6

43.689

83.74

0.366
  ssbB/cilA Streptococcus mitis SK321

43.689

83.74

0.366