Detailed information NTG0639128

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: LVB87_RS01800
• Genome accession: NZ_CP089925
• Coordinates: 371406..372605 (+)
• Length: 399 a.a.
• NCBI ID: WP_232900412.1
• Uniprot ID: -
• Organism: Lysobacter sp. KIS68-7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 366406..377605

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LVB87_RS01780 (LVB87_01780)	-	366725..367468 (-)	744	WP_232899216.1	class I SAM-dependent methyltransferase	-
LVB87_RS01785 (LVB87_01785)	-	367465..368601 (-)	1137	WP_232899217.1	glycosyltransferase family 4 protein	-
LVB87_RS01790 (LVB87_01790)	-	368613..369464 (-)	852	WP_232899218.1	glycosyltransferase family 2 protein	-
LVB87_RS01795 (LVB87_01795)	pilB	369586..371310 (+)	1725	WP_232899219.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LVB87_RS01800 (LVB87_01800)	pilC	371406..372605 (+)	1200	WP_232900412.1	type II secretion system F family protein	Machinery gene
LVB87_RS01805 (LVB87_01805)	-	372606..373472 (+)	867	WP_232899220.1	A24 family peptidase	-
LVB87_RS01810 (LVB87_01810)	coaE	373477..374082 (+)	606	WP_232899221.1	dephospho-CoA kinase	-
LVB87_RS01815 (LVB87_01815)	-	374086..375057 (-)	972	WP_232899222.1	Nudix family hydrolase	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 43322.24 Da
• Isoelectric Point: 9.8700

>NTDB_id=639128 LVB87_RS01800 WP_232900412.1 371406..372605(+) (pilC) [Lysobacter sp. KIS68-7]
MTVFVWEGNDKRGVKMKGEQPSKSANLLRAELRKQGITPSMVKPKPKPLFGSSGSRVKPKDIAVFSRQIATMLKSGVPIV
TSMEIIGGGQKNPKMGELVNNIRSDIESGSSLSESLSKHPVQFDELYRNLVKAGESAGVLDTVLDTVATYKENIEALKGK
IKKAMFYPAMVVAVALLVSAILLVWVVPQFKDVFANFGAELPAFTLAVINLSEFMVKWWWLIFLVVAGTIVGFIALKKRS
PPFAHLLDRVVLKLPVIGKIMNEAALARFSRTLAVTFAAGVPLVEALDTVAGACGNTVYENAVRRMRDDVSVGYQVNVAM
KQTGLFPHMVTQMTAIGEEAGALDTMLYKVAEFYEAEVNNAVDALASLLEPIIVVMLGVIVGSMVIAMYLPIFKLASVV

Nucleotide

• Length: 1200 bp

>NTDB_id=639128 LVB87_RS01800 WP_232900412.1 371406..372605(+) (pilC) [Lysobacter sp. KIS68-7]
ATGACCGTGTTCGTCTGGGAAGGCAACGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAGCCCTCGAAGTCGGCGAACCT
GCTGCGCGCGGAACTGCGCAAGCAGGGCATCACGCCTTCGATGGTCAAGCCCAAGCCGAAGCCGCTGTTCGGCAGCTCCG
GCTCGCGCGTCAAGCCGAAGGACATCGCCGTGTTCAGTCGCCAGATCGCGACCATGCTCAAGTCGGGCGTGCCGATCGTG
ACCTCGATGGAAATCATCGGCGGCGGCCAGAAGAACCCGAAGATGGGCGAGCTGGTGAACAACATCCGCTCCGACATCGA
AAGCGGTTCCTCGCTGTCGGAATCGCTGAGCAAGCACCCGGTGCAGTTCGACGAGCTCTACCGCAACCTGGTCAAGGCCG
GTGAATCCGCGGGCGTGCTGGACACCGTGCTCGACACGGTGGCCACGTACAAGGAAAACATCGAAGCGCTGAAGGGCAAG
ATCAAGAAAGCGATGTTCTACCCGGCGATGGTCGTCGCGGTGGCGCTGCTGGTCTCGGCCATCCTGCTGGTGTGGGTGGT
GCCGCAGTTCAAGGACGTGTTCGCGAACTTCGGCGCCGAGCTGCCCGCCTTCACCCTGGCGGTCATCAACCTCTCCGAGT
TCATGGTCAAGTGGTGGTGGCTGATCTTCCTGGTGGTCGCCGGCACGATCGTCGGCTTCATCGCGCTGAAGAAACGTTCG
CCGCCCTTCGCGCACCTGCTGGACCGCGTGGTCCTGAAGCTGCCGGTCATCGGCAAGATCATGAACGAGGCGGCCCTCGC
CCGGTTCTCGCGCACCCTCGCGGTGACCTTCGCCGCCGGCGTGCCGCTGGTCGAAGCGCTCGACACCGTGGCCGGCGCGT
GCGGCAACACCGTCTACGAGAACGCCGTGCGCCGCATGCGCGACGACGTCTCGGTGGGCTACCAGGTCAACGTGGCGATG
AAGCAGACGGGCCTGTTCCCGCACATGGTCACGCAGATGACGGCGATCGGTGAAGAAGCCGGTGCGCTCGACACGATGCT
GTACAAGGTGGCCGAGTTCTACGAGGCGGAGGTCAACAACGCCGTCGACGCGCTGGCCAGCCTGCTCGAGCCGATCATCG
TGGTCATGCTCGGCGTGATCGTGGGCTCGATGGTGATCGCCATGTACCTGCCGATCTTCAAGCTCGCATCGGTGGTCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (65-188)

• Type II secretion system (T2SS), protein F (T2SSF) (269-391)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	56.03	99.749	0.559
pilC	Legionella pneumophila strain ERS1305867	55.138	100	0.551
pilC	Acinetobacter baylyi ADP1	52	100	0.521
pilC	Acinetobacter baumannii D1279779	51	100	0.511
pilG	Neisseria gonorrhoeae MS11	43.829	99.499	0.436
pilG	Neisseria meningitidis 44/76-A	43.325	99.499	0.431
pilC	Vibrio cholerae strain A1552	42.172	99.248	0.419
pilC	Vibrio campbellii strain DS40M4	40.657	99.248	0.404
pilC	Thermus thermophilus HB27	37.5	100	0.398