Detailed information NTG0639117

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: LVB77_RS18250
• Genome accession: NZ_CP089924
• Coordinates: 4052561..4053814 (+)
• Length: 417 a.a.
• NCBI ID: WP_232907488.1
• Uniprot ID: -
• Organism: Lysobacter sp. 5GHs7-4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4047561..4058814

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LVB77_RS18240 (LVB77_18240)	-	4048747..4050681 (+)	1935	WP_232907485.1	hypothetical protein	-
LVB77_RS18245 (LVB77_18245)	pilB	4050830..4052557 (+)	1728	WP_232907487.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LVB77_RS18250 (LVB77_18250)	pilC	4052561..4053814 (+)	1254	WP_232907488.1	type II secretion system F family protein	Machinery gene
LVB77_RS18255 (LVB77_18255)	pilD	4053838..4054701 (+)	864	WP_232907490.1	A24 family peptidase	Machinery gene
LVB77_RS18260 (LVB77_18260)	coaE	4054707..4055318 (+)	612	WP_232907491.1	dephospho-CoA kinase	-
LVB77_RS18265 (LVB77_18265)	-	4055466..4056425 (-)	960	WP_232907492.1	Nudix family hydrolase	-

Sequence

Protein

• Length: 417 a.a.
• Molecular weight: 45245.51 Da
• Isoelectric Point: 10.1321

>NTDB_id=639117 LVB77_RS18250 WP_232907488.1 4052561..4053814(+) (pilC) [Lysobacter sp. 5GHs7-4]
MSATRSATKPAAARRPNPLEIFVWEGKDKRGVVMKGEQSAKNANMLRAELRRQGITPGTVKPKGKPLLGGAGKRITPRDI
AIFSRQIATMMKSGVPIVTSLEIMAGGQKNPKMKTLINTVRADLEGGSSMHEALSKHPVQFDELYRNLVKAGESAGVLET
VLDTVASYKENIESLKGKIKKALFYPATVVAVAILVSAILLIFVVPQFEKTFESFGAELPAFTLMIIGASDFMIAYWWAV
LLVLIGTGVGFIMAKNRSPAFAHFLDRMMLKIPVVGQILHNSAIARFARTLAVTFKAGVPLVEALDTVAGATGNVVYESA
VRRIRDDVAVGYQLNMSMKQVNLFPHMVIQMTAIGEEAGALDTMLFKVAEFYEEEVNNAVDALSSLLEPLIMMVLGVIVG
SMVIGMYLPIFKLAATI

Nucleotide

• Length: 1254 bp

>NTDB_id=639117 LVB77_RS18250 WP_232907488.1 4052561..4053814(+) (pilC) [Lysobacter sp. 5GHs7-4]
ATGTCCGCGACCCGCTCCGCGACCAAGCCCGCCGCCGCCCGCCGCCCCAATCCGCTCGAGATCTTTGTCTGGGAAGGCAA
GGACAAGCGTGGCGTCGTCATGAAGGGCGAGCAGTCGGCCAAGAACGCCAACATGCTGCGCGCCGAGCTGCGCCGCCAGG
GCATCACGCCCGGCACGGTCAAGCCCAAGGGCAAGCCGCTGCTCGGCGGCGCCGGCAAGCGCATCACGCCGCGCGACATC
GCCATCTTCAGCCGTCAGATCGCGACCATGATGAAATCCGGCGTGCCGATCGTGACCTCGCTGGAGATCATGGCCGGCGG
CCAGAAGAACCCCAAGATGAAGACGCTGATCAACACGGTCCGCGCCGACCTCGAAGGCGGCTCGTCGATGCACGAGGCGC
TGAGTAAGCATCCGGTCCAGTTCGACGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAATCGGCCGGTGTGCTGGAAACG
GTGCTCGACACCGTCGCCAGCTACAAGGAAAACATCGAAAGCCTGAAGGGCAAGATCAAGAAGGCGCTGTTCTATCCGGC
CACGGTCGTGGCGGTGGCGATCCTGGTCAGCGCGATCCTGCTGATCTTCGTGGTGCCGCAGTTCGAGAAGACCTTCGAGA
GCTTCGGCGCCGAGCTGCCGGCGTTCACCCTGATGATCATCGGCGCCAGCGATTTCATGATCGCGTATTGGTGGGCGGTG
CTGCTGGTGCTGATCGGCACCGGCGTGGGCTTCATCATGGCCAAGAACCGCTCGCCGGCCTTCGCCCACTTCCTGGACCG
CATGATGCTGAAGATCCCGGTGGTCGGGCAGATCCTGCACAACTCCGCGATCGCGCGTTTCGCCCGCACCCTGGCCGTGA
CCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGCTGGACACCGTCGCCGGCGCCACCGGCAACGTGGTCTACGAATCGGCC
GTGCGCCGCATCCGCGACGACGTCGCGGTGGGCTACCAGCTCAATATGTCGATGAAGCAGGTCAACCTGTTCCCGCACAT
GGTGATCCAGATGACCGCGATCGGCGAAGAGGCCGGCGCGCTCGACACCATGCTGTTCAAGGTCGCCGAGTTCTACGAGG
AAGAGGTCAACAACGCCGTCGACGCGCTGTCCAGCCTGCTCGAACCGCTGATCATGATGGTGCTGGGCGTGATCGTCGGC
AGCATGGTCATCGGCATGTACCTGCCGATCTTCAAGCTCGCCGCGACGATCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (287-409)

• Type II secretion system (T2SS), protein F (T2SSF) (83-206)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	55.25	95.923	0.53
pilC	Pseudomonas stutzeri DSM 10701	54.912	95.204	0.523
pilC	Acinetobacter baumannii D1279779	50.614	97.602	0.494
pilC	Acinetobacter baylyi ADP1	50.123	97.602	0.489
pilG	Neisseria gonorrhoeae MS11	42.928	96.643	0.415
pilG	Neisseria meningitidis 44/76-A	42.68	96.643	0.412
pilC	Thermus thermophilus HB27	38.571	100	0.388
pilC	Vibrio campbellii strain DS40M4	39.098	95.683	0.374
pilC	Vibrio cholerae strain A1552	38.25	95.923	0.367