Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DYST_RS09720 Genome accession   NZ_CP089414
Coordinates   2266614..2267876 (+) Length   420 a.a.
NCBI ID   WP_239951582.1    Uniprot ID   -
Organism   Dyella terrae strain Ely Copper Mine     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2261614..2272876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYST_RS09705 (DYST_01989) - 2262348..2263202 (-) 855 WP_239951579.1 glycosyltransferase family 2 protein -
  DYST_RS09710 (DYST_01990) - 2263332..2264504 (-) 1173 WP_239951580.1 DegT/DnrJ/EryC1/StrS family aminotransferase -
  DYST_RS09715 (DYST_01991) pilB 2264734..2266455 (+) 1722 WP_239951581.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DYST_RS09720 (DYST_01992) pilC 2266614..2267876 (+) 1263 WP_239951582.1 type II secretion system F family protein Machinery gene
  DYST_RS09725 (DYST_01993) - 2267948..2268805 (+) 858 WP_239951583.1 A24 family peptidase -
  DYST_RS09730 (DYST_01994) - 2268817..2270538 (+) 1722 WP_239951584.1 sulfatase-like hydrolase/transferase -
  DYST_RS09735 (DYST_01995) coaE 2270535..2271167 (+) 633 WP_239951586.1 dephospho-CoA kinase -
  DYST_RS09740 (DYST_01996) - 2271172..2272125 (-) 954 WP_239951588.1 Nudix family hydrolase -
  DYST_RS09745 (DYST_01997) - 2272138..2272626 (-) 489 WP_239951589.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45558.78 Da        Isoelectric Point: 10.1525

>NTDB_id=636859 DYST_RS09720 WP_239951582.1 2266614..2267876(+) (pilC) [Dyella terrae strain Ely Copper Mine]
MAAATAKNVKSLGAQRAEISKLTTYDWVALDKRGKRMKGDMAAKNASLVKAELRRQGMNPQTVKERGKPLFGAAGSSVKP
RDVAIFSRQIATMMASGVPMVQAFEIIADGQKNIRFKNMLTDVKQTIEGGSALHEALAKYPVQFDELYRNLVHAGEASGV
LDSVLDTVATYKERTEAIKAKIKKALFYPVMVLAVALLVSMIMLLFVVPVFAQTFKDAGAELPAPTQIVISASNFMKSYW
WLVIGAIVGSIVALVMAKSRSIKFAHFLDRVMLKVPVIGNILRQSAIARFARTLGVTFRAGVPLVEAMDAVAGATGSVVY
GDAVKQMREDVAVGHQLQLSMRQTGLFPNMVVQMTAIGEESGALDHMLFKVAEFYEEEVNNAVDTLSTLLEPLIMVILGV
LVGGMVISLYLPIFKLASTV

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=636859 DYST_RS09720 WP_239951582.1 2266614..2267876(+) (pilC) [Dyella terrae strain Ely Copper Mine]
ATGGCTGCGGCCACCGCTAAGAACGTCAAGTCGCTTGGCGCCCAGCGCGCTGAGATCAGCAAGCTGACTACCTACGACTG
GGTGGCGCTCGACAAGCGCGGCAAGCGCATGAAGGGCGACATGGCGGCCAAGAACGCCTCGCTCGTCAAAGCCGAGCTGC
GCCGCCAGGGCATGAACCCGCAGACCGTGAAGGAACGGGGCAAGCCCCTGTTCGGTGCGGCCGGCAGCTCGGTCAAGCCT
CGCGACGTCGCCATTTTCAGCCGCCAGATCGCCACCATGATGGCCTCCGGCGTGCCGATGGTGCAGGCATTCGAAATCAT
CGCGGACGGCCAGAAGAACATCCGCTTCAAGAACATGCTGACGGACGTCAAGCAGACCATTGAGGGCGGTTCCGCGCTCC
ATGAGGCGCTGGCCAAGTACCCCGTCCAGTTCGACGAGCTTTATCGAAATCTGGTCCATGCAGGCGAGGCGTCGGGTGTG
CTCGACTCGGTGCTGGACACCGTGGCCACGTACAAGGAACGCACGGAAGCCATCAAAGCCAAGATCAAGAAGGCGCTTTT
CTATCCGGTCATGGTGCTGGCCGTGGCACTGCTGGTCAGCATGATCATGCTGCTCTTTGTGGTGCCAGTGTTCGCTCAGA
CGTTCAAGGACGCCGGTGCGGAGCTTCCTGCACCGACGCAGATCGTGATCAGCGCCTCAAACTTCATGAAGTCTTACTGG
TGGCTAGTGATTGGCGCCATTGTCGGCAGCATTGTCGCCCTGGTGATGGCCAAGAGCCGCTCGATCAAGTTCGCGCACTT
CCTTGACCGCGTGATGCTGAAAGTGCCGGTCATCGGCAATATTCTCCGGCAGTCGGCCATTGCCCGCTTTGCGCGCACCC
TCGGCGTGACCTTTCGCGCCGGCGTACCCCTGGTGGAAGCCATGGATGCCGTCGCGGGCGCCACGGGCAGCGTGGTCTAC
GGCGATGCGGTCAAGCAGATGCGCGAAGACGTGGCCGTCGGTCACCAGTTGCAGCTTTCGATGCGCCAGACAGGCCTGTT
CCCGAACATGGTCGTGCAGATGACGGCCATCGGTGAAGAATCCGGTGCCCTCGATCACATGCTCTTCAAGGTGGCAGAGT
TCTACGAGGAAGAAGTAAACAACGCGGTCGATACACTCTCCACCCTGCTCGAACCTCTGATCATGGTGATCCTGGGCGTG
CTCGTCGGCGGCATGGTTATTTCGCTTTACCTGCCGATCTTCAAGCTCGCCAGCACCGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(86-209)

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

55.138

95

0.524
  pilC Pseudomonas stutzeri DSM 10701

53

95.238

0.505
  pilC Acinetobacter baumannii D1279779

49.5

95.238

0.471
  pilC Acinetobacter baylyi ADP1

47.805

97.619

0.467
  pilG Neisseria meningitidis 44/76-A

43.005

91.905

0.395
  pilG Neisseria gonorrhoeae MS11

43.005

91.905

0.395
  pilC Vibrio cholerae strain A1552

40.806

94.524

0.386
  pilC Vibrio campbellii strain DS40M4

39.85

95

0.379
  pilC Thermus thermophilus HB27

37.081

99.524

0.369