Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   PALA17_RS23350 Genome accession   NZ_CP106745
Coordinates   4978552..4979016 (-) Length   154 a.a.
NCBI ID   WP_003122079.1    Uniprot ID   P17836
Organism   Pseudomonas aeruginosa strain PALA17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4973552..4984016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA17_RS23335 (PALA17_04636) nadC 4976062..4976910 (+) 849 WP_012614540.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PALA17_RS23345 (PALA17_04638) - 4977091..4978476 (-) 1386 WP_003122080.1 O-antigen ligase family protein -
  PALA17_RS23350 (PALA17_04639) pilA 4978552..4979016 (-) 465 WP_003122079.1 pilin Machinery gene
  PALA17_RS23355 (PALA17_04640) pilB 4979247..4980947 (+) 1701 WP_003122078.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PALA17_RS23360 (PALA17_04641) pilC 4980951..4982168 (+) 1218 WP_003107299.1 type II secretion system F family protein Machinery gene
  PALA17_RS23365 (PALA17_04642) pilD 4982169..4983041 (+) 873 WP_003107301.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  PALA17_RS23370 (PALA17_04643) coaE 4983038..4983649 (+) 612 WP_003094654.1 dephospho-CoA kinase -
  PALA17_RS23375 (PALA17_04644) yacG 4983646..4983846 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16277.67 Da        Isoelectric Point: 8.9987

>NTDB_id=636262 PALA17_RS23350 WP_003122079.1 4978552..4979016(-) (pilA) [Pseudomonas aeruginosa strain PALA17]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEVSALKTAAESAILEGKEIVSSATPKDTQYDIGFTE
STLLDGSGKSQIQVTDNKDGTVELVATLGKSSGSAIKGAVITVSRKNDGVWNCKITKTPTAWKPNYAPANCPKS

Nucleotide


Download         Length: 465 bp        

>NTDB_id=636262 PALA17_RS23350 WP_003122079.1 4978552..4979016(-) (pilA) [Pseudomonas aeruginosa strain PALA17]
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTTGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAGTCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGGAAGGAGATTGTTTCCAGCGCGACTCCTAAAGATACCCAGTATGACATTGGCTTCACCGAG
TCTACTTTGCTAGATGGTTCTGGTAAGAGTCAGATCCAGGTAACGGACAATAAAGATGGCACCGTTGAGTTGGTCGCTAC
CTTGGGTAAATCTTCTGGTTCCGCTATCAAAGGGGCTGTAATCACTGTTTCGCGTAAAAATGACGGAGTCTGGAACTGCA
AAATCACCAAAACTCCTACAGCTTGGAAGCCCAACTACGCTCCGGCTAATTGCCCGAAATCCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(35-151)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 8V7P

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

44.737

98.701

0.442
  pilA/pilAI Pseudomonas stutzeri DSM 10701

44.444

99.351

0.442
  pilA Pseudomonas aeruginosa PAK

45.985

88.961

0.409
  pilA2 Legionella pneumophila strain ERS1305867

39.073

98.052

0.383
  pilA Vibrio parahaemolyticus RIMD 2210633

37.255

99.351

0.37
  pilA2 Legionella pneumophila str. Paris

38

97.403

0.37
  pilA Vibrio cholerae strain A1552

36.774

100

0.37
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

36.774

100

0.37
  pilA Vibrio cholerae C6706

36.774

100

0.37