Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LSO60_RS14835 Genome accession   NZ_CP089051
Coordinates   3122839..3124065 (+) Length   408 a.a.
NCBI ID   WP_044434069.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain RIVM_C010559     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3117839..3129065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO60_RS14800 (LSO60_14775) rimP 3118389..3118913 (-) 525 WP_263512502.1 ribosome maturation factor RimP -
  LSO60_RS14820 (LSO60_14795) secG 3119599..3119928 (-) 330 WP_004991669.1 preprotein translocase subunit SecG -
  LSO60_RS14825 (LSO60_14800) tpiA 3119938..3120735 (-) 798 WP_044434065.1 triose-phosphate isomerase -
  LSO60_RS14830 (LSO60_14805) pilB 3121087..3122808 (+) 1722 WP_044434067.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LSO60_RS14835 (LSO60_14810) pilC 3122839..3124065 (+) 1227 WP_044434069.1 type II secretion system F family protein Machinery gene
  LSO60_RS14840 pilD 3124065..3124925 (+) 861 WP_044434071.1 A24 family peptidase Machinery gene
  LSO60_RS14845 (LSO60_14825) coaE 3124928..3125521 (+) 594 WP_044434073.1 dephospho-CoA kinase -
  LSO60_RS14850 (LSO60_14830) - 3125503..3126426 (-) 924 WP_044434075.1 DMT family transporter -
  LSO60_RS14855 (LSO60_14835) rlmB 3126467..3127216 (-) 750 WP_263512503.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LSO60_RS14860 (LSO60_14840) - 3127336..3127662 (-) 327 WP_004991681.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45176.83 Da        Isoelectric Point: 9.9736

>NTDB_id=634829 LSO60_RS14835 WP_044434069.1 3122839..3124065(+) (pilC) [Acinetobacter ursingii strain RIVM_C010559]
MAIQKTQMMPTFAYEGVDRKGGKIVGELSARNIALAKVTLRKQGITIKTIRQKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLILSFEIVAEGLENPAMREVVINLKREVEGGSTFADALRKYPQYFDSLFCSLVESGEISGALETMLDRVAIYK
EKSELLKQKIKKAMKYPITVIVVAMIVTIILMVKVVPVFQDLFSSFGAELPAFTQMVVNMSKWMQSYWFIMIIGIGVVIA
VFLETKKRSKKFRNALDRMALKLPIFGDLIYKSIIARYSRTLATTFAAGVPLIDALKSTAGATNNVIYEDAVMKIREDVA
TGQQLQFAMKTSNLFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=634829 LSO60_RS14835 WP_044434069.1 3122839..3124065(+) (pilC) [Acinetobacter ursingii strain RIVM_C010559]
ATGGCAATTCAAAAAACACAAATGATGCCAACTTTTGCTTATGAAGGGGTTGATCGAAAGGGAGGAAAAATTGTAGGAGA
ATTATCTGCAAGAAATATAGCCCTCGCAAAAGTAACTTTGCGTAAGCAAGGTATCACCATTAAGACAATTCGCCAAAAAC
GTAAGAATATTTTAGAAGGGCTATTTAAGAAAAAAGTCACTACATTAGATATTACGATTTTCACGCGACAACTTGCGACC
ATGATGAAAGCAGGTGTTCCTTTAATTCTAAGTTTTGAAATTGTTGCTGAAGGCTTAGAAAACCCAGCGATGCGAGAAGT
AGTAATTAACCTAAAACGTGAAGTTGAAGGAGGAAGTACTTTTGCAGATGCTTTACGCAAATATCCCCAATATTTTGATT
CATTATTTTGTTCCTTAGTGGAATCTGGTGAAATATCTGGTGCGCTTGAAACCATGCTAGATCGTGTCGCGATCTACAAG
GAAAAAAGTGAGCTTTTAAAACAAAAAATCAAAAAAGCCATGAAATACCCGATTACTGTCATTGTTGTTGCAATGATTGT
CACGATTATTTTGATGGTAAAAGTCGTCCCCGTCTTTCAGGATTTATTTAGCTCATTTGGCGCAGAACTTCCTGCTTTTA
CCCAGATGGTGGTGAATATGTCAAAATGGATGCAATCCTACTGGTTCATTATGATTATAGGGATTGGTGTCGTCATTGCT
GTATTTTTAGAAACAAAGAAACGAAGTAAAAAATTTCGTAACGCCTTAGATAGAATGGCATTAAAACTGCCAATTTTTGG
TGATTTAATCTATAAATCAATTATTGCACGTTATAGCCGCACCCTTGCAACTACTTTTGCTGCCGGCGTCCCTTTAATTG
ATGCTCTAAAATCAACTGCTGGCGCGACCAATAATGTGATTTACGAAGATGCTGTTATGAAGATTCGTGAAGATGTTGCC
ACGGGTCAACAACTCCAGTTTGCCATGAAAACATCTAACTTATTTCCATCTATGGCTGTTCAAATGGTTGCCATTGGTGA
AGAATCTGGTGCACTAGATGCAATGCTGGATAAAGTTGCTACACATTATGAAAATGAAGTCGATAATGCTGTAGATGGCC
TGACTTCTATGATGGAACCCTTGATTATGGCTATTCTCGGTGTGCTGGTTGGTGGTCTGGTCATCGCTATGTATCTTCCA
ATTTTCCAGATGGGTTCAGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.235

100

0.882
  pilC Acinetobacter baylyi ADP1

81.373

100

0.814
  pilC Pseudomonas stutzeri DSM 10701

60.988

99.265

0.605
  pilC Legionella pneumophila strain ERS1305867

54.02

97.549

0.527
  pilG Neisseria meningitidis 44/76-A

47.118

97.794

0.461
  pilG Neisseria gonorrhoeae MS11

47.118

97.794

0.461
  pilC Vibrio cholerae strain A1552

41.912

100

0.419
  pilC Vibrio campbellii strain DS40M4

40.648

98.284

0.4