Detailed information NTG0634830

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LSO60_RS14840
• Genome accession: NZ_CP089051
• Coordinates: 3124065..3124925 (+)
• Length: 286 a.a.
• NCBI ID: WP_044434071.1
• Uniprot ID: -
• Organism: Acinetobacter ursingii strain RIVM_C010559
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3119065..3129925

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LSO60_RS14820 (LSO60_14795)	secG	3119599..3119928 (-)	330	WP_004991669.1	preprotein translocase subunit SecG	-
LSO60_RS14825 (LSO60_14800)	tpiA	3119938..3120735 (-)	798	WP_044434065.1	triose-phosphate isomerase	-
LSO60_RS14830 (LSO60_14805)	pilB	3121087..3122808 (+)	1722	WP_044434067.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LSO60_RS14835 (LSO60_14810)	pilC	3122839..3124065 (+)	1227	WP_044434069.1	type II secretion system F family protein	Machinery gene
LSO60_RS14840	pilD	3124065..3124925 (+)	861	WP_044434071.1	A24 family peptidase	Machinery gene
LSO60_RS14845 (LSO60_14825)	coaE	3124928..3125521 (+)	594	WP_044434073.1	dephospho-CoA kinase	-
LSO60_RS14850 (LSO60_14830)	-	3125503..3126426 (-)	924	WP_044434075.1	DMT family transporter	-
LSO60_RS14855 (LSO60_14835)	rlmB	3126467..3127216 (-)	750	WP_263512503.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
LSO60_RS14860 (LSO60_14840)	-	3127336..3127662 (-)	327	WP_004991681.1	pyrimidine/purine nucleoside phosphorylase	-
LSO60_RS14865 (LSO60_14845)	recN	3128171..3129832 (+)	1662	WP_263512504.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32101.55 Da
• Isoelectric Point: 7.8325

>NTDB_id=634830 LSO60_RS14840 WP_044434071.1 3124065..3124925(+) (pilD) [Acinetobacter ursingii strain RIVM_C010559]
MSEILNYFIQTPTALYLAVGIFSLCIGSFLNVVIYRTPKMMEQDWHTECQMLLHPDQAIIDQDKLTLSSPPSTCPKCHSR
IRWYQNIPLLSWLFLKGKCGHCQNPISIRYPLVELLTMLCSLMIVAVFGPSLQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINSYSLYVSPTASIWGYLIGFLCLWVVYYLFKIITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIILLKIRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=634830 LSO60_RS14840 WP_044434071.1 3124065..3124925(+) (pilD) [Acinetobacter ursingii strain RIVM_C010559]
ATGTCCGAAATTCTTAATTATTTTATCCAAACCCCAACTGCGCTTTATCTTGCAGTTGGGATTTTTAGCTTGTGCATTGG
TAGTTTTTTAAATGTTGTGATTTATCGCACGCCTAAAATGATGGAACAAGACTGGCATACTGAGTGCCAGATGTTGTTAC
ATCCTGATCAAGCGATCATTGATCAAGATAAACTGACATTAAGTTCACCACCTTCAACCTGCCCCAAATGCCATAGCCGT
ATTCGTTGGTATCAAAATATTCCATTGCTCAGTTGGCTATTTTTAAAAGGTAAATGTGGCCATTGTCAAAATCCGATTAG
CATCCGTTATCCTTTGGTTGAACTGCTCACGATGCTATGTTCACTGATGATCGTGGCTGTCTTTGGCCCGAGCCTTCAAA
TGCTGTTTGGTCTGGTTTTAACTTGGGTGCTTATTGCACTGACATTTATTGATTTTGATACTCAACTGTTACCCGATCGT
TTTACTCTGCCGCTAGCAGCATTAGGTCTAGGGATTAATAGCTATAGTCTTTATGTCTCACCAACCGCCTCGATTTGGGG
CTATCTGATTGGTTTTTTATGTCTGTGGGTTGTCTATTATTTATTCAAAATCATCACTGGTAAAGAAGGGATGGGCTATG
GCGATTTTAAGTTACTTGCTGCTCTCGGCGCATGGATGGGGCCTTTGATGCTTCCACTGATTGTGCTACTTTCTTCATTG
GTCGGTGCGATTATTGGGATCATTTTACTCAAAATCCGTAAAGAAAATCAGCCATTTGCCTTTGGCCCTTATATCGCTAT
TGCTGGATGGATCGCCTTTTTATGGGGTGAGCAAATTATGAAAGTTTATCTGGGAGGCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	81.818	100	0.818
pilD	Acinetobacter baumannii D1279779	80.769	100	0.808
pilD	Vibrio campbellii strain DS40M4	51.228	99.65	0.51
pilD	Vibrio cholerae strain A1552	54.307	93.357	0.507
pilD	Neisseria gonorrhoeae MS11	44.689	95.455	0.427