Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LSO58_RS15045 Genome accession   NZ_CP089044
Coordinates   3178568..3179794 (+) Length   408 a.a.
NCBI ID   WP_004991675.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain RIVM_C010761     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3173568..3184794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO58_RS15010 (LSO58_14980) rimP 3174119..3174643 (-) 525 WP_004991666.1 ribosome maturation factor RimP -
  LSO58_RS15030 (LSO58_15000) secG 3175329..3175658 (-) 330 WP_004991669.1 preprotein translocase subunit SecG -
  LSO58_RS15035 (LSO58_15005) tpiA 3175668..3176465 (-) 798 WP_004991671.1 triose-phosphate isomerase -
  LSO58_RS15040 (LSO58_15010) pilB 3176816..3178537 (+) 1722 WP_004991672.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LSO58_RS15045 (LSO58_15015) pilC 3178568..3179794 (+) 1227 WP_004991675.1 type II secretion system F family protein Machinery gene
  LSO58_RS15050 pilD 3179794..3180654 (+) 861 WP_004991676.1 prepilin peptidase Machinery gene
  LSO58_RS15055 (LSO58_15030) coaE 3180657..3181250 (+) 594 WP_004991677.1 dephospho-CoA kinase -
  LSO58_RS15060 (LSO58_15035) - 3181232..3182155 (-) 924 WP_004991678.1 DMT family transporter -
  LSO58_RS15065 (LSO58_15040) rlmB 3182196..3182945 (-) 750 WP_004991679.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LSO58_RS15070 (LSO58_15045) - 3183065..3183391 (-) 327 WP_004991681.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45130.74 Da        Isoelectric Point: 9.9736

>NTDB_id=634789 LSO58_RS15045 WP_004991675.1 3178568..3179794(+) (pilC) [Acinetobacter ursingii strain RIVM_C010761]
MAIQKTQMMPTFAYEGVDRKGGKIVGELSARNIALAKVTLRKQGITIKTIRQKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLILSFEIVAEGLENPAMREVVINLKREVEGGSTFADALRKYPQYFDSLFCSLVESGEISGALETMLDRVAIYK
EKSELLKQKIKKAMKYPITVIVVAVIVTIILMVKVVPVFQDLFSSFGAELPAFTQMVVNMSKWMQSYWFIMIIGIGVVIA
VFLETKKRSKKFRNALDRMALKLPIFGDLIYKSIIARYSRTLATTFAAGVPLIDALKSTAGATNNVIYEDAVMKIREDVA
TGQQLQFAMKTSNLFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVVAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=634789 LSO58_RS15045 WP_004991675.1 3178568..3179794(+) (pilC) [Acinetobacter ursingii strain RIVM_C010761]
ATGGCAATTCAAAAAACACAAATGATGCCAACTTTTGCTTATGAAGGGGTTGATCGAAAGGGAGGAAAAATTGTAGGAGA
ATTATCCGCAAGAAATATAGCCCTCGCAAAAGTAACTTTGCGTAAGCAAGGTATCACCATTAAGACAATTCGCCAAAAAC
GTAAGAATATTTTAGAAGGGCTATTTAAGAAAAAAGTCACTACATTAGATATTACGATTTTCACGCGACAACTTGCGACC
ATGATGAAAGCAGGTGTTCCTTTAATTCTAAGTTTTGAAATTGTTGCTGAAGGCTTAGAAAACCCAGCGATGCGAGAAGT
AGTAATTAACCTAAAACGTGAAGTTGAAGGAGGAAGTACTTTTGCAGATGCTTTACGCAAATATCCCCAATATTTTGATT
CATTATTTTGTTCCTTAGTGGAATCTGGTGAAATATCTGGTGCGCTTGAAACCATGCTAGATCGTGTCGCGATTTACAAG
GAAAAAAGTGAGCTTTTAAAACAAAAAATCAAAAAAGCCATGAAATACCCGATTACGGTCATTGTTGTTGCTGTGATTGT
CACGATTATTTTGATGGTAAAAGTCGTCCCCGTCTTTCAGGATTTATTTAGCTCATTTGGCGCAGAACTTCCTGCTTTTA
CCCAGATGGTGGTGAATATGTCAAAATGGATGCAATCCTACTGGTTCATTATGATTATAGGGATTGGTGTCGTCATTGCT
GTATTTTTAGAAACAAAGAAACGAAGTAAAAAATTTCGTAACGCCTTAGATAGAATGGCATTAAAACTGCCAATTTTTGG
TGATTTAATCTATAAATCAATTATTGCACGTTATAGCCGCACCCTTGCAACTACTTTTGCCGCAGGTGTACCTTTAATTG
ATGCTCTAAAATCAACTGCGGGTGCCACCAATAATGTGATTTATGAAGATGCTGTTATGAAGATTCGTGAAGATGTTGCC
ACTGGACAACAACTACAATTTGCCATGAAAACATCCAACTTATTTCCTTCAATGGCTGTTCAAATGGTGGCTATTGGTGA
AGAGTCTGGTGCATTGGATGCCATGCTCGACAAAGTTGCCACGCATTATGAAAATGAAGTCGACAATGCTGTAGACGGAC
TAACCTCCATGATGGAACCTTTGATCATGGCAATTCTCGGCGTACTAGTCGGCGGTCTGGTCGTCGCCATGTATCTTCCA
ATTTTCCAGATGGGTTCAGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

87.99

100

0.88
  pilC Acinetobacter baylyi ADP1

81.127

100

0.811
  pilC Pseudomonas stutzeri DSM 10701

60.988

99.265

0.605
  pilC Legionella pneumophila strain ERS1305867

54.271

97.549

0.529
  pilG Neisseria meningitidis 44/76-A

47.368

97.794

0.463
  pilG Neisseria gonorrhoeae MS11

47.368

97.794

0.463
  pilC Vibrio cholerae strain A1552

42.157

100

0.422
  pilC Vibrio campbellii strain DS40M4

40.648

98.284

0.4