Detailed information NTG0634790

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LSO58_RS15050
• Genome accession: NZ_CP089044
• Coordinates: 3179794..3180654 (+)
• Length: 286 a.a.
• NCBI ID: WP_004991676.1
• Uniprot ID: -
• Organism: Acinetobacter ursingii strain RIVM_C010761
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3174794..3185654

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LSO58_RS15030 (LSO58_15000)	secG	3175329..3175658 (-)	330	WP_004991669.1	preprotein translocase subunit SecG	-
LSO58_RS15035 (LSO58_15005)	tpiA	3175668..3176465 (-)	798	WP_004991671.1	triose-phosphate isomerase	-
LSO58_RS15040 (LSO58_15010)	pilB	3176816..3178537 (+)	1722	WP_004991672.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LSO58_RS15045 (LSO58_15015)	pilC	3178568..3179794 (+)	1227	WP_004991675.1	type II secretion system F family protein	Machinery gene
LSO58_RS15050	pilD	3179794..3180654 (+)	861	WP_004991676.1	prepilin peptidase	Machinery gene
LSO58_RS15055 (LSO58_15030)	coaE	3180657..3181250 (+)	594	WP_004991677.1	dephospho-CoA kinase	-
LSO58_RS15060 (LSO58_15035)	-	3181232..3182155 (-)	924	WP_004991678.1	DMT family transporter	-
LSO58_RS15065 (LSO58_15040)	rlmB	3182196..3182945 (-)	750	WP_004991679.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
LSO58_RS15070 (LSO58_15045)	-	3183065..3183391 (-)	327	WP_004991681.1	pyrimidine/purine nucleoside phosphorylase	-
LSO58_RS15075 (LSO58_15050)	recN	3183899..3185560 (+)	1662	WP_004991683.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32133.59 Da
• Isoelectric Point: 7.8325

>NTDB_id=634790 LSO58_RS15050 WP_004991676.1 3179794..3180654(+) (pilD) [Acinetobacter ursingii strain RIVM_C010761]
MSEILNYFIQTPTALYLAVGIFSLCIGSFLNVVIYRTPKMMEQDWHTECQMLLHPDQAIIDQDKLTLSSPPSTCPKCHSR
IRWYQNIPLLSWLFLKGKCGHCQNPISIRYPLIELLTMLCSLMIVAVFGPSFQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGVNSYSLYVSPTAAIWGYLIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIILLKIRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=634790 LSO58_RS15050 WP_004991676.1 3179794..3180654(+) (pilD) [Acinetobacter ursingii strain RIVM_C010761]
ATGTCCGAAATTCTTAATTATTTTATCCAAACCCCAACTGCGCTTTATCTTGCAGTTGGGATTTTTAGCTTGTGCATTGG
TAGTTTTTTAAATGTTGTGATTTATCGCACGCCAAAAATGATGGAACAGGACTGGCACACTGAGTGCCAGATGTTGTTAC
ATCCTGATCAAGCGATCATTGATCAAGATAAACTGACATTAAGTTCACCACCTTCAACCTGCCCCAAATGCCATAGCCGT
ATTCGTTGGTATCAAAATATTCCATTGCTCAGTTGGCTATTTTTAAAAGGTAAATGTGGCCATTGTCAAAATCCGATTAG
CATCCGTTATCCTTTGATTGAACTGCTCACGATGCTATGTTCACTGATGATCGTGGCTGTCTTTGGCCCGAGCTTTCAAA
TGCTGTTTGGTCTGGTTTTAACTTGGGTGCTTATTGCCCTCACGTTTATTGATTTTGATACTCAACTGTTGCCCGATCGT
TTTACTCTGCCGCTAGCAGCATTAGGTCTAGGGGTTAATAGCTATAGTCTTTATGTCTCACCAACCGCCGCGATTTGGGG
CTATCTGATTGGTTTTTTATGCCTGTGGATTGTCTATTATTTATTTAAAATCATTACAGGTAAAGAAGGGATGGGCTATG
GCGATTTTAAGTTACTTGCTGCTCTCGGCGCATGGATGGGACCTTTGATGCTTCCACTGATTGTGCTACTTTCTTCACTG
GTCGGTGCGATTATAGGGATTATTTTACTCAAAATTCGTAAAGAAAATCAGCCATTTGCCTTTGGCCCTTATATCGCCAT
TGCTGGATGGATCGCCTTTTTATGGGGTGAGCAAATTATGAAAGTTTATCTGGGAGGCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	82.517	100	0.825
pilD	Acinetobacter baumannii D1279779	81.469	100	0.815
pilD	Vibrio cholerae strain A1552	55.056	93.357	0.514
pilD	Vibrio campbellii strain DS40M4	51.228	99.65	0.51
pilD	Neisseria gonorrhoeae MS11	45.421	95.455	0.434