Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LSO59_RS15390 Genome accession   NZ_CP089038
Coordinates   3290365..3291591 (+) Length   408 a.a.
NCBI ID   WP_151832276.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain RIVM_C011601     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3285365..3296591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSO59_RS15355 (LSO59_15330) rimP 3285996..3286520 (-) 525 WP_004991666.1 ribosome maturation factor RimP -
  LSO59_RS15375 (LSO59_15350) secG 3287206..3287535 (-) 330 WP_004991669.1 preprotein translocase subunit SecG -
  LSO59_RS15380 (LSO59_15355) tpiA 3287545..3288342 (-) 798 WP_005001192.1 triose-phosphate isomerase -
  LSO59_RS15385 (LSO59_15360) pilB 3288623..3290335 (+) 1713 WP_262546817.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LSO59_RS15390 (LSO59_15365) pilC 3290365..3291591 (+) 1227 WP_151832276.1 type II secretion system F family protein Machinery gene
  LSO59_RS15395 pilD 3291591..3292451 (+) 861 WP_005001186.1 prepilin peptidase Machinery gene
  LSO59_RS15400 (LSO59_15380) coaE 3292454..3293047 (+) 594 WP_005001184.1 dephospho-CoA kinase -
  LSO59_RS15405 (LSO59_15385) - 3293029..3293952 (-) 924 WP_005001182.1 DMT family transporter -
  LSO59_RS15410 (LSO59_15390) rlmB 3293993..3294742 (-) 750 WP_004994270.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LSO59_RS15415 (LSO59_15395) - 3294862..3295188 (-) 327 WP_004991681.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45071.65 Da        Isoelectric Point: 10.0203

>NTDB_id=634748 LSO59_RS15390 WP_151832276.1 3290365..3291591(+) (pilC) [Acinetobacter ursingii strain RIVM_C011601]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPARNMALAKVTLRKQGVTIKTIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMRDVVLGLKNEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPITVIVVALIVTIILMVKVVPVFQDLFSSFGAELPAFTQMVVNMSKWMQSYWFIMIIGIGVVIA
VFLETKKRSKKFRNALDRMALKLPIFGDLIYKSIIARYSRTLATTFAAGVPLIDALKSTAGATNNVIYEDAVMKIREDVA
TGQQLQFAMKTSNLFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVVAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=634748 LSO59_RS15390 WP_151832276.1 3290365..3291591(+) (pilC) [Acinetobacter ursingii strain RIVM_C011601]
ATGGCAGTCAAAAAAGCGCAAATGATGCCAACTTTTGCTTATGAAGGGGTTGACCGTAAAGGGGTCAAAATCAAGGGTGA
ACTACCAGCGCGAAATATGGCGTTGGCAAAAGTTACCTTACGCAAACAAGGCGTTACCATCAAGACGATTCGGGAGAAAC
GTAAGAATATTCTGGAGGGGCTATTTAAGAAAAAAGTCACTACACTGGATATTACGATTTTCACGCGACAACTGGCGACC
ATGATGAAAGCGGGTGTGCCGTTGGTACAAGGTTTTGAAATTGTAGCAGAAGGTTTAGAAAACCCTTCGATGCGCGATGT
CGTCCTAGGCTTAAAAAATGAAGTAGAAGGCGGTAATACCTTTGCGGGAGCATTACGCAAATATCCACAATACTTTGATA
ATCTTTTTTGCTCACTGGTGGAATCAGGCGAACAATCGGGCGCACTCGAGACTATGCTTGATCGTGTCGCGATCTATAAG
GAAAAAAGTGAGCTTTTAAAACAGAAAATCAAAAAAGCCATGAAATATCCGATTACTGTCATTGTTGTTGCACTCATTGT
CACGATTATTTTGATGGTAAAAGTCGTCCCCGTCTTTCAGGATTTATTTAGCTCATTTGGCGCAGAACTTCCTGCTTTTA
CCCAGATGGTGGTGAATATGTCAAAATGGATGCAATCCTACTGGTTCATTATGATTATAGGGATTGGTGTCGTCATTGCT
GTATTTTTAGAAACAAAGAAACGAAGTAAAAAATTTCGTAACGCCTTAGATAGAATGGCATTAAAACTGCCAATTTTTGG
TGATTTAATCTATAAATCAATTATTGCACGTTATAGCCGCACCCTTGCAACTACTTTTGCCGCAGGTGTACCTTTAATTG
ATGCTCTAAAATCAACTGCGGGTGCCACCAATAATGTGATTTATGAAGATGCTGTTATGAAGATTCGTGAAGATGTTGCC
ACTGGACAACAACTACAATTTGCCATGAAAACATCCAACTTATTTCCTTCAATGGCTGTTCAAATGGTGGCTATTGGTGA
AGAGTCTGGTGCATTGGATGCCATGCTCGACAAAGTTGCCACGCATTATGAAAATGAAGTCGACAATGCTGTAGACGGAC
TAACCTCCATGATGGAACCTTTGATCATGGCAATTCTCGGCGTACTAGTCGGCGGTCTGGTCGTCGCCATGTATCTTCCA
ATTTTCCAGATGGGCTCAGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

91.176

100

0.912
  pilC Acinetobacter baylyi ADP1

84.069

100

0.841
  pilC Pseudomonas stutzeri DSM 10701

60.988

99.265

0.605
  pilC Legionella pneumophila strain ERS1305867

54.321

99.265

0.539
  pilG Neisseria meningitidis 44/76-A

46.617

97.794

0.456
  pilG Neisseria gonorrhoeae MS11

46.617

97.794

0.456
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407