Detailed information NTG0634749

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LSO59_RS15395
• Genome accession: NZ_CP089038
• Coordinates: 3291591..3292451 (+)
• Length: 286 a.a.
• NCBI ID: WP_005001186.1
• Uniprot ID: N9C6I8
• Organism: Acinetobacter ursingii strain RIVM_C011601
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3286591..3297451

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LSO59_RS15375 (LSO59_15350)	secG	3287206..3287535 (-)	330	WP_004991669.1	preprotein translocase subunit SecG	-
LSO59_RS15380 (LSO59_15355)	tpiA	3287545..3288342 (-)	798	WP_005001192.1	triose-phosphate isomerase	-
LSO59_RS15385 (LSO59_15360)	pilB	3288623..3290335 (+)	1713	WP_262546817.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LSO59_RS15390 (LSO59_15365)	pilC	3290365..3291591 (+)	1227	WP_151832276.1	type II secretion system F family protein	Machinery gene
LSO59_RS15395	pilD	3291591..3292451 (+)	861	WP_005001186.1	prepilin peptidase	Machinery gene
LSO59_RS15400 (LSO59_15380)	coaE	3292454..3293047 (+)	594	WP_005001184.1	dephospho-CoA kinase	-
LSO59_RS15405 (LSO59_15385)	-	3293029..3293952 (-)	924	WP_005001182.1	DMT family transporter	-
LSO59_RS15410 (LSO59_15390)	rlmB	3293993..3294742 (-)	750	WP_004994270.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
LSO59_RS15415 (LSO59_15395)	-	3294862..3295188 (-)	327	WP_004991681.1	pyrimidine/purine nucleoside phosphorylase	-
LSO59_RS15420 (LSO59_15400)	recN	3295694..3297355 (+)	1662	WP_005001181.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32085.55 Da
• Isoelectric Point: 7.8325

>NTDB_id=634749 LSO59_RS15395 WP_005001186.1 3291591..3292451(+) (pilD) [Acinetobacter ursingii strain RIVM_C011601]
MSEILNYFIQTPTALYLAVGIFSLCIGSFLNVVIYRTPKMMEQDWHTECQMLLHPDQAIIDQDKLTLSSPPSTCPKCHSR
IRWYQNIPLLSWVFLKGKCSHCQNPISIRYPLVELLTMLCSLMIVAVFGPSLQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINSYGLYVSPTAAIWGYLIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIILLKIRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=634749 LSO59_RS15395 WP_005001186.1 3291591..3292451(+) (pilD) [Acinetobacter ursingii strain RIVM_C011601]
ATGTCTGAAATTCTTAATTATTTTATCCAAACCCCAACTGCGCTTTATCTTGCAGTTGGGATTTTTAGCTTGTGCATTGG
TAGTTTTTTAAATGTTGTGATTTATCGCACGCCTAAAATGATGGAACAGGACTGGCACACTGAGTGCCAGATGTTATTAC
ATCCTGATCAAGCGATCATTGATCAAGATAAACTGACATTAAGTTCACCACCTTCAACCTGCCCTAAATGCCATAGCCGT
ATTCGTTGGTATCAAAATATTCCATTGCTCAGTTGGGTATTTTTAAAAGGTAAATGTAGCCATTGTCAAAATCCGATTAG
CATCCGTTATCCTTTGGTTGAACTGCTCACGATGCTATGTTCACTGATGATCGTAGCTGTCTTTGGGCCTAGCCTTCAAA
TGCTGTTTGGTCTGGTTTTAACTTGGGTGCTTATTGCACTGACATTTATTGATTTTGATACTCAACTGTTACCCGATCGT
TTTACTCTACCGCTAGCAGCATTGGGGCTAGGGATTAATAGCTATGGTCTTTATGTCTCACCAACCGCCGCGATTTGGGG
CTATCTGATTGGTTTTTTATGTCTGTGGATTGTCTATTATTTATTTAAAATCATCACAGGTAAAGAAGGGATGGGCTATG
GCGACTTTAAGTTGCTCGCTGCACTTGGCGCATGGATGGGACCTTTGATGCTTCCACTCATTGTGCTACTTTCTTCACTG
GTCGGTGCGATTATTGGGATTATTTTACTCAAAATTCGTAAAGAAAATCAGCCATTTGCCTTTGGTCCTTATATCGCAAT
TGCTGGATGGATCGCCTTTTTATGGGGTGAGCAAATTATGAAAGTTTATCTGGGAGGCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

3D structure

• AlphaFold DB: N9C6I8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	81.818	100	0.818
pilD	Acinetobacter baumannii D1279779	80.769	100	0.808
pilD	Vibrio cholerae strain A1552	54.887	93.007	0.51
pilD	Vibrio campbellii strain DS40M4	50.877	99.65	0.507
pilD	Neisseria gonorrhoeae MS11	45.055	95.455	0.43