Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SMAL454_RS17080 Genome accession   NZ_CP088957
Coordinates   3661216..3662475 (+) Length   419 a.a.
NCBI ID   WP_154329584.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain 454     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3656216..3667475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMAL454_RS17060 (SMAL454_34020) pilR 3656409..3657782 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  SMAL454_RS17065 (SMAL454_34030) pilB 3657909..3659642 (-) 1734 WP_005414305.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SMAL454_RS17070 (SMAL454_34040) pilA/pilAI 3659866..3660273 (-) 408 WP_154329696.1 pilin Machinery gene
  SMAL454_RS17075 (SMAL454_34050) - 3660426..3660863 (-) 438 WP_043035129.1 pilin -
  SMAL454_RS17080 (SMAL454_34060) pilC 3661216..3662475 (+) 1260 WP_154329584.1 type II secretion system F family protein Machinery gene
  SMAL454_RS17085 (SMAL454_34070) - 3662483..3663346 (+) 864 WP_005410800.1 A24 family peptidase -
  SMAL454_RS17090 (SMAL454_34080) coaE 3663358..3663969 (+) 612 WP_049452340.1 dephospho-CoA kinase -
  SMAL454_RS17095 (SMAL454_34090) - 3664034..3664345 (-) 312 Protein_3340 hypothetical protein -
  SMAL454_RS17100 (SMAL454_34100) - 3664842..3666209 (-) 1368 WP_043034309.1 HAMP domain-containing sensor histidine kinase -
  SMAL454_RS17105 (SMAL454_34110) - 3666172..3666849 (-) 678 WP_005410804.1 response regulator transcription factor -
  SMAL454_RS17110 (SMAL454_34120) - 3666858..3667328 (-) 471 WP_005410805.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45884.37 Da        Isoelectric Point: 10.1071

>NTDB_id=634244 SMAL454_RS17080 WP_154329584.1 3661216..3662475(+) (pilC) [Stenotrophomonas maltophilia strain 454]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKPKPLFGAAGSAVKPKD
IAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKLVDTIRTDIEGGSSMYEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQMVVNLSRFMVSWWWL
MLLVAIGTAVALVMSYKRSPKMQHAMDRLVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=634244 SMAL454_RS17080 WP_154329584.1 3661216..3662475(+) (pilC) [Stenotrophomonas maltophilia strain 454]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGCGCCACCATGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTGCGCCGCC
AGGGCATCAACCCGGGCCAGGTCAAGCCCAAGCCGAAGCCGCTGTTCGGCGCCGCCGGCAGCGCGGTCAAGCCCAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTGTCGGCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGCTGGTCGACACCATCCGCACCGACATCGAGGGCGGCTCCTCGATGTACGAGG
CGATCAGCAAGCACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTGCGGGCCGGCGAAGGTGCCGGCGTTCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAGAACATCGAAGCGCTGAAGGGCAAGATCAAGAAAGCGCTGTTCTACCC
GATCATGGTGGTGGTGGTGGCCATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTGCCGCAGTTCGAGGACGTGTTCA
AGAGCTTTGGTGCCGAGCTGCCCGCCTTCACCCAGATGGTGGTGAACCTTTCGAGATTCATGGTGTCGTGGTGGTGGCTG
ATGCTGCTGGTCGCGATCGGTACGGCGGTCGCCCTGGTCATGTCCTACAAGCGCTCGCCGAAGATGCAGCATGCGATGGA
CCGGCTCGTGCTGAAGGTGCCGGTGATCGGGCAGATCATGCACAACAGCGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TGACCTTCAAGGCCGGCGTACCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGTGCTACCGGCAACACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGCGACGACGTCTCGGTGGGTTACCCGGTGAACATGTCGATGAAACAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCTGGTGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.051

94.511

0.52
  pilC Acinetobacter baylyi ADP1

51.597

97.136

0.501
  pilC Legionella pneumophila strain ERS1305867

51.88

95.227

0.494
  pilC Acinetobacter baumannii D1279779

50.123

97.136

0.487
  pilG Neisseria gonorrhoeae MS11

44.221

94.988

0.42
  pilG Neisseria meningitidis 44/76-A

43.97

94.988

0.418
  pilC Vibrio cholerae strain A1552

41.872

96.897

0.406
  pilC Vibrio campbellii strain DS40M4

41.397

95.704

0.396
  pilC Thermus thermophilus HB27

38.06

95.943

0.365