Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   SMAL454_RS17070 Genome accession   NZ_CP088957
Coordinates   3659866..3660273 (-) Length   135 a.a.
NCBI ID   WP_154329696.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain 454     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3654866..3665273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMAL454_RS17060 (SMAL454_34020) pilR 3656409..3657782 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  SMAL454_RS17065 (SMAL454_34030) pilB 3657909..3659642 (-) 1734 WP_005414305.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SMAL454_RS17070 (SMAL454_34040) pilA/pilAI 3659866..3660273 (-) 408 WP_154329696.1 pilin Machinery gene
  SMAL454_RS17075 (SMAL454_34050) - 3660426..3660863 (-) 438 WP_043035129.1 pilin -
  SMAL454_RS17080 (SMAL454_34060) pilC 3661216..3662475 (+) 1260 WP_154329584.1 type II secretion system F family protein Machinery gene
  SMAL454_RS17085 (SMAL454_34070) - 3662483..3663346 (+) 864 WP_005410800.1 A24 family peptidase -
  SMAL454_RS17090 (SMAL454_34080) coaE 3663358..3663969 (+) 612 WP_049452340.1 dephospho-CoA kinase -
  SMAL454_RS17095 (SMAL454_34090) - 3664034..3664345 (-) 312 Protein_3340 hypothetical protein -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14340.51 Da        Isoelectric Point: 5.5999

>NTDB_id=634243 SMAL454_RS17070 WP_154329696.1 3659866..3660273(-) (pilA/pilAI) [Stenotrophomonas maltophilia strain 454]
MNTQKGFTLIELMIVVAIIGILAAIATVAFQPYIIRTQLTAALADISPGKMLVETVVYENRSASLITPEFIGGAQNAHCS
NVEAELSDSGVGHISCTLKGHSALDGKDLILRRSAEGIWSCDGSAFEARYRPTGC

Nucleotide


Download         Length: 408 bp        

>NTDB_id=634243 SMAL454_RS17070 WP_154329696.1 3659866..3660273(-) (pilA/pilAI) [Stenotrophomonas maltophilia strain 454]
ATGAACACGCAGAAGGGCTTTACGCTCATCGAGCTGATGATCGTGGTGGCCATCATCGGCATTCTGGCGGCCATCGCGAC
GGTGGCGTTCCAGCCTTACATCATCCGTACTCAGCTGACGGCCGCGCTGGCCGACATCAGCCCGGGCAAGATGCTGGTTG
AAACGGTCGTCTATGAAAACCGCTCGGCCAGCCTGATCACCCCCGAGTTCATCGGTGGCGCCCAGAACGCCCACTGCTCC
AACGTCGAAGCCGAACTCAGCGATTCCGGCGTCGGCCATATCAGCTGCACCTTGAAGGGACACAGCGCGCTGGACGGCAA
GGACCTGATCCTGCGCCGCTCCGCCGAGGGCATCTGGAGCTGCGATGGCAGCGCGTTCGAAGCGCGCTATCGCCCGACCG
GCTGCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(36-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

48.529

100

0.489
  pilA/pilAII Pseudomonas stutzeri DSM 10701

41.912

100

0.422
  pilA Acinetobacter baumannii strain A118

41.606

100

0.422
  pilA2 Legionella pneumophila strain ERS1305867

41.304

100

0.422
  pilA Pseudomonas aeruginosa PAK

37.748

100

0.422
  pilA2 Legionella pneumophila str. Paris

40.299

99.259

0.4
  comP Acinetobacter baylyi ADP1

35.333

100

0.393
  pilA Ralstonia pseudosolanacearum GMI1000

37.594

98.519

0.37