Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LPC09_RS24030 Genome accession   NZ_CP088245
Coordinates   4808240..4808587 (-) Length   115 a.a.
NCBI ID   WP_098798622.1    Uniprot ID   -
Organism   Metabacillus sp. B2-18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4803240..4813587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC09_RS24020 (LPC09_24020) - 4804140..4806899 (+) 2760 WP_098795701.1 DEAD/DEAH box helicase -
  LPC09_RS24025 (LPC09_24025) - 4807103..4807975 (-) 873 WP_331275790.1 DUF6612 family protein -
  LPC09_RS24030 (LPC09_24030) ssbB 4808240..4808587 (-) 348 WP_098798622.1 single-stranded DNA-binding protein Machinery gene
  LPC09_RS24035 (LPC09_24035) - 4808771..4809178 (-) 408 WP_231308626.1 hypothetical protein -
  LPC09_RS24040 (LPC09_24040) - 4809486..4809872 (+) 387 WP_176551162.1 helix-turn-helix transcriptional regulator -
  LPC09_RS24045 (LPC09_24045) - 4809949..4810272 (+) 324 WP_231308627.1 YwpF-like family protein -
  LPC09_RS24050 (LPC09_24050) cotJC 4810471..4811040 (-) 570 WP_098798617.1 spore coat protein CotJC -
  LPC09_RS24055 (LPC09_24055) - 4811494..4811760 (-) 267 WP_098798616.1 spore coat protein CotJB -
  LPC09_RS24060 (LPC09_24060) - 4811757..4812005 (-) 249 WP_098798625.1 spore coat associated protein CotJA -
  LPC09_RS24065 (LPC09_24065) - 4812173..4812496 (-) 324 WP_098798615.1 hypothetical protein -
  LPC09_RS24070 (LPC09_24070) fabZ 4812702..4813142 (-) 441 WP_098798614.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LPC09_RS24075 (LPC09_24075) - 4813236..4813520 (-) 285 WP_176551161.1 DNA-directed RNA polymerase subunit beta -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12842.54 Da        Isoelectric Point: 8.4827

>NTDB_id=633493 LPC09_RS24030 WP_098798622.1 4808240..4808587(-) (ssbB) [Metabacillus sp. B2-18]
MINQIILVGRLTKDPEIRYTADGAPVANITLAVSRSFRNAAGEIETDFVNCTVWRRTAENTANYCRKGSIVGVTGRIQTR
SYENAEKTRVYVTEVVADSVRFMSGKPRELVEQEA

Nucleotide


Download         Length: 348 bp        

>NTDB_id=633493 LPC09_RS24030 WP_098798622.1 4808240..4808587(-) (ssbB) [Metabacillus sp. B2-18]
GTGATCAATCAAATCATTTTGGTTGGAAGATTAACAAAAGACCCCGAAATTCGCTACACAGCTGATGGAGCACCGGTGGC
GAACATCACACTTGCTGTTAGCCGAAGCTTCCGAAATGCAGCCGGAGAAATTGAAACAGATTTTGTGAATTGTACGGTGT
GGAGACGAACTGCTGAGAATACGGCTAACTACTGCCGCAAAGGTTCAATCGTAGGTGTCACAGGTCGTATCCAAACACGA
AGCTATGAAAATGCTGAAAAAACCCGTGTTTATGTTACAGAAGTTGTTGCTGATTCTGTTCGCTTTATGAGTGGTAAGCC
ACGTGAACTAGTCGAGCAAGAAGCTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

73.394

94.783

0.696
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.321

92.174

0.565
  ssb Latilactobacillus sakei subsp. sakei 23K

53.982

98.261

0.53
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.593

93.913

0.4
  ssbA Streptococcus mutans UA159

39.815

93.913

0.374
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.815

93.913

0.374
  ssbB/cilA Streptococcus pneumoniae Rx1

38.889

93.913

0.365
  ssbB/cilA Streptococcus pneumoniae D39

38.889

93.913

0.365
  ssbB/cilA Streptococcus pneumoniae R6

38.889

93.913

0.365
  ssbB/cilA Streptococcus mitis SK321

38.889

93.913

0.365