Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LQ331_RS15245 Genome accession   NZ_CP088240
Coordinates   3277286..3278545 (+) Length   419 a.a.
NCBI ID   WP_062605780.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain 2013-SM24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3272286..3283545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ331_RS15225 (LQ331_15225) pilR 3272484..3273857 (+) 1374 WP_062605786.1 sigma-54 dependent transcriptional regulator Regulator
  LQ331_RS15230 (LQ331_15230) pilB 3273983..3275716 (-) 1734 WP_062605785.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LQ331_RS15235 (LQ331_15235) - 3275939..3276346 (-) 408 WP_062605784.1 pilin -
  LQ331_RS15240 (LQ331_15240) - 3276499..3276933 (-) 435 WP_062605782.1 pilin -
  LQ331_RS15245 (LQ331_15245) pilC 3277286..3278545 (+) 1260 WP_062605780.1 type II secretion system F family protein Machinery gene
  LQ331_RS15250 (LQ331_15250) - 3278553..3279416 (+) 864 WP_005410800.1 A24 family peptidase -
  LQ331_RS15255 (LQ331_15255) coaE 3279428..3280039 (+) 612 WP_062605778.1 dephospho-CoA kinase -
  LQ331_RS15260 (LQ331_15260) - 3280299..3280685 (-) 387 WP_231336626.1 hypothetical protein -
  LQ331_RS15265 (LQ331_15265) - 3281180..3282547 (-) 1368 WP_043034309.1 HAMP domain-containing sensor histidine kinase -
  LQ331_RS15270 (LQ331_15270) - 3282510..3283187 (-) 678 WP_005410804.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45908.36 Da        Isoelectric Point: 10.1408

>NTDB_id=633403 LQ331_RS15245 WP_062605780.1 3277286..3278545(+) (pilC) [Stenotrophomonas maltophilia strain 2013-SM24]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKSKPLFGAAGSPIKPKD
IAFFSRQMATMMKSGVPIVSSLDIIASGHKNPRMKKLVDTIRTDIEGGSSMHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQMVVNLSRFMVSWWWL
MLLVAIGTAVGLVMAYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=633403 LQ331_RS15245 WP_062605780.1 3277286..3278545(+) (pilC) [Stenotrophomonas maltophilia strain 2013-SM24]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGTGCCACCATGGAACTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTGCGCCGCC
AGGGCATCAACCCGGGCCAGGTCAAGCCCAAGTCGAAGCCGCTGTTCGGCGCCGCCGGCAGCCCGATCAAGCCCAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTATCGTCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGCTGGTGGACACCATCCGCACCGACATCGAAGGCGGCTCTTCGATGCATGAAG
CCATCAGCAAGCACCCGGTGCAGTTCGATGAGCTTTACCGCAACCTGGTGCGGGCCGGCGAAGGCGCCGGCGTGCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAAAACATCGAAGCGCTGAAGGGCAAGATCAAGAAGGCGCTGTTCTACCC
GATCATGGTGGTGGTGGTCGCGATGCTGGTCAGTGGCATCATGCTGGTGTTCGTGGTGCCGCAGTTCGAGGACGTGTTCA
AGAGCTTCGGTGCCGAACTGCCCGCCTTCACCCAGATGGTGGTGAACCTCTCGAGATTCATGGTGTCGTGGTGGTGGCTG
ATGCTGCTGGTCGCGATCGGCACGGCGGTCGGACTGGTCATGGCCTACAAGCGCTCGCCGAAGATGCAGCATGCGATGGA
CCGGTTCGTGCTGAAGGTGCCGGTGATCGGGCAGATCATGCACAACAGCGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGCGCCACCGGCAATACCGTGTACGAGGAG
GCGGTGCTGCGCATGCGCGACGACGTCTCGGTGGGCTACCCGGTGAACATGTCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCCGGCGCGCTGGATGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.556

94.511

0.525
  pilC Acinetobacter baylyi ADP1

51.106

97.136

0.496
  pilC Legionella pneumophila strain ERS1305867

52.13

95.227

0.496
  pilC Acinetobacter baumannii D1279779

49.631

97.136

0.482
  pilG Neisseria gonorrhoeae MS11

44.888

95.704

0.43
  pilG Neisseria meningitidis 44/76-A

44.527

95.943

0.427
  pilC Vibrio cholerae strain A1552

41.626

96.897

0.403
  pilC Vibrio campbellii strain DS40M4

41.147

95.704

0.394
  pilC Thermus thermophilus HB27

37.531

96.659

0.363