Detailed information NTG0633401

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LQ331_RS15225
• Genome accession: NZ_CP088240
• Coordinates: 3272484..3273857 (+)
• Length: 457 a.a.
• NCBI ID: WP_062605786.1
• Uniprot ID: -
• Organism: Stenotrophomonas maltophilia strain 2013-SM24
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3267484..3278857

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LQ331_RS15210 (LQ331_15210)	sucD	3268386..3269261 (-)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-
LQ331_RS15215 (LQ331_15215)	sucC	3269283..3270452 (-)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
LQ331_RS15220 (LQ331_15220)	-	3270810..3272423 (+)	1614	WP_062605787.1	ATP-binding protein	-
LQ331_RS15225 (LQ331_15225)	pilR	3272484..3273857 (+)	1374	WP_062605786.1	sigma-54 dependent transcriptional regulator	Regulator
LQ331_RS15230 (LQ331_15230)	pilB	3273983..3275716 (-)	1734	WP_062605785.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LQ331_RS15235 (LQ331_15235)	-	3275939..3276346 (-)	408	WP_062605784.1	pilin	-
LQ331_RS15240 (LQ331_15240)	-	3276499..3276933 (-)	435	WP_062605782.1	pilin	-
LQ331_RS15245 (LQ331_15245)	pilC	3277286..3278545 (+)	1260	WP_062605780.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49527.82 Da
• Isoelectric Point: 6.4407

>NTDB_id=633401 LQ331_RS15225 WP_062605786.1 3272484..3273857(+) (pilR) [Stenotrophomonas maltophilia strain 2013-SM24]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIAVLRGLVKHALELNNAERPVPGPNAEQGGRLLGHSQAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRAPGSAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=633401 LQ331_RS15225 WP_062605786.1 3272484..3273857(+) (pilR) [Stenotrophomonas maltophilia strain 2013-SM24]
ATGAATGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAGGCACGTGAGCTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCGGATGGCAACGGCATCGAGCTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTTGCG
ATGATCACCGCGTTCGGCAGCATGGATCTCGCCGTGGAGGCGCTGAAGGCCGGCGCGTTCGATTTCGTCAGCAAGCCGGT
GGACATCGCGGTGCTGCGCGGACTGGTCAAGCACGCGCTGGAACTCAACAACGCCGAGCGCCCGGTACCGGGCCCCAACG
CCGAACAGGGCGGGCGCCTGCTTGGCCACTCACAGGCCATGGATGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGCGAGTCGGGTGTCGGCAAGGAGCTGGTCGCACGCACCATCCATGCGCAGGGCGCACG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCA
AGGGCAGTTTCAGCGGCGCGCACGCCGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGCACCCTGTTCCTGGACGAA
GTGGCTGAACTGCCACTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCGCGGTGGGGGCGGC
CAACGAGGAGCCGGTAGATGTCCGCATCCTCTCGGCCACCCACAAGGATCTGGCCGAGCTGGTCGAGGACGGACGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAAGGTGCCACCGCTGCGCGAGCGCCGCCAGGACCTGCCGGAG
CTGGCCGCCGCCGTGCTGGCCCGATTGGCCCGCAGCCACGGCCGTGCCACCCCGCTGCTGGCGCCGTCGGCGCTGGAAGC
GCTGGCGCAGTACGCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATCCTGGAACGTGCGCTGGCCCTGGCCGAGGAAG
ACTGCATCGGCGCCGATGACCTGCGCCTGCCGCAGCACGCGCCGCGTGCACCCGGCAGCGCGGCGCCCGCCGAAGCGGTG
GCCGACCTGCAGCCGGGCAGCGCCGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCAGCGCCATCCAGCGTGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGTACTGCCGCGCAGCTGGGCATCACCTTCCGTGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.158	99.781	0.63
pilR	Acinetobacter baumannii strain A118	48.38	100	0.49
luxO	Vibrio cholerae strain A1552	37.303	97.374	0.363