Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LP119_RS03120 Genome accession   NZ_CP087805
Coordinates   597562..599214 (+) Length   550 a.a.
NCBI ID   WP_264697699.1    Uniprot ID   -
Organism   Moraxella bovis strain SAM57942     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 592562..604214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP119_RS03090 (LP119_03070) comM 592793..593851 (+) 1059 WP_112741888.1 pilus assembly protein PilM Machinery gene
  LP119_RS03095 (LP119_03075) - 593851..594732 (+) 882 WP_264677904.1 PilN domain-containing protein -
  LP119_RS03100 (LP119_03080) pilO 594729..595571 (+) 843 WP_078273208.1 type 4a pilus biogenesis protein PilO -
  LP119_RS03105 (LP119_03085) - 595568..596098 (+) 531 WP_228157777.1 pilus assembly protein PilP -
  LP119_RS03110 (LP119_03090) - 596133..596519 (+) 387 WP_264697698.1 AMIN domain-containing protein -
  LP119_RS12980 - 596557..596925 (+) 369 WP_272506256.1 IS630 transposase-related protein -
  LP119_RS12985 - 596964..597464 (+) 501 WP_272506410.1 transposase -
  LP119_RS03120 (LP119_03100) pilQ 597562..599214 (+) 1653 WP_264697699.1 type IV pilus secretin PilQ Machinery gene
  LP119_RS03125 (LP119_03105) - 599336..599944 (+) 609 WP_336278192.1 shikimate kinase -
  LP119_RS03130 (LP119_03110) aroB 599991..601091 (+) 1101 WP_264683691.1 3-dehydroquinate synthase -
  LP119_RS03135 (LP119_03115) - 601264..602265 (+) 1002 WP_264677907.1 hypothetical protein -
  LP119_RS03140 (LP119_03120) - 602321..602944 (+) 624 WP_264677908.1 carbonic anhydrase -
  LP119_RS03145 (LP119_03125) gloA 603002..603535 (+) 534 WP_264677909.1 lactoylglutathione lyase -

Sequence

Protein


Download         Length: 550 a.a.        Molecular weight: 59245.93 Da        Isoelectric Point: 5.2722

>NTDB_id=631540 LP119_RS03120 WP_264697699.1 597562..599214(+) (pilQ) [Moraxella bovis strain SAM57942]
MTVKVNPLLAPTSGSLASSYDGVSTVDYSGNANGGNVTVNLTNESIPVDVQRQGNKLVVRTTGTTIPRHLLKRINGSGLV
ADIDAKNQGQNGVITVNMTGDFEYQAYQSGATLNISVLPPKMLREPTIEEKVYTGEPLSMEFQDVSVRTVLDVLGQFTEN
NIVAADNVQGNITLRLINVPWDQALDIILKSKNLGQRKNGNVILVAPAEELAAREIKELEDAKKVDELEPIRQEHIRLNY
AKAEDIHGLLDRVGSSSGSNNNRNSLLSPRGNATFDGRTNTIIINDTARSIANVRQLIETIDIPVKQVMIEARIVNASDS
FSKQLGVRWGFNRTGNKFDIRGMKGLSSSNTESRFGNFAVDLGVAATSGISLGLLNIDNYALGLELSAMQADNKGEIISS
PKVLTSDKQPARISSGVDIPYQEASASGATTVSFKEAALVLSATPNITPEGKIGLDLEITNSADSGNRVLGVPILNTDEI
KTNVILEDGQTVVLGGVFKNTIGNNQSKVPFLGDLPGVGRLFRNNVRLNNKEELLIFVTPRIVNDGVSRY

Nucleotide


Download         Length: 1653 bp        

>NTDB_id=631540 LP119_RS03120 WP_264697699.1 597562..599214(+) (pilQ) [Moraxella bovis strain SAM57942]
ATGACTGTAAAAGTAAACCCATTGTTAGCACCTACCTCGGGTTCTTTGGCAAGTAGTTATGACGGCGTCTCAACAGTCGA
TTACTCAGGTAATGCTAATGGTGGTAATGTTACCGTAAACCTAACCAATGAGTCCATTCCTGTGGATGTACAACGCCAAG
GTAATAAACTGGTGGTTCGCACCACTGGCACTACCATTCCACGTCATTTATTAAAACGTATTAATGGTAGTGGTTTGGTT
GCGGATATTGATGCAAAAAATCAAGGTCAAAATGGTGTTATTACGGTTAACATGACAGGTGATTTTGAGTACCAAGCCTA
TCAATCAGGTGCAACACTTAACATCTCAGTATTGCCACCAAAAATGCTCCGTGAACCGACCATTGAAGAGAAGGTTTATA
CTGGTGAACCGTTATCAATGGAATTTCAGGATGTATCAGTGCGTACGGTGCTGGATGTATTGGGTCAATTCACTGAAAAT
AACATTGTTGCTGCTGATAATGTGCAGGGTAATATTACATTAAGACTTATTAATGTCCCATGGGATCAAGCATTAGACAT
TATCCTAAAAAGTAAAAATCTAGGTCAGCGCAAAAATGGTAACGTGATTTTGGTAGCACCTGCTGAAGAGTTGGCAGCAC
GCGAAATTAAAGAGTTGGAAGATGCTAAAAAGGTAGATGAATTAGAACCTATTCGTCAAGAGCATATCCGTCTTAACTAT
GCCAAGGCGGAAGACATTCATGGTCTATTAGATAGAGTTGGTAGTTCAAGTGGCTCTAATAATAACCGTAACTCACTACT
TAGCCCACGTGGTAATGCTACCTTTGATGGTCGTACCAACACCATCATCATCAATGATACGGCACGAAGCATTGCAAATG
TACGTCAATTAATTGAAACTATTGACATTCCTGTTAAACAGGTAATGATTGAGGCTCGCATTGTTAATGCATCAGACTCT
TTTTCTAAGCAGTTGGGTGTAAGATGGGGTTTTAATAGAACGGGTAATAAATTTGACATTCGCGGAATGAAGGGATTGTC
TTCTTCAAACACCGAATCACGTTTTGGTAACTTTGCTGTTGATTTAGGTGTTGCAGCTACAAGTGGTATATCGCTAGGAC
TGTTGAATATTGATAATTATGCACTGGGCTTGGAATTGTCAGCAATGCAGGCTGATAATAAAGGAGAGATTATCTCTTCG
CCAAAAGTCTTAACATCTGATAAACAACCAGCCAGAATCTCATCTGGGGTGGATATTCCTTATCAAGAGGCATCAGCCAG
TGGTGCAACAACAGTCAGCTTTAAAGAAGCGGCCTTAGTGCTATCTGCCACACCAAACATCACCCCAGAGGGTAAGATAG
GTCTAGATTTAGAAATTACCAACTCTGCGGACTCCGGCAATAGGGTGTTGGGCGTACCAATTCTTAATACAGATGAGATA
AAAACCAATGTTATCTTAGAAGATGGTCAGACTGTGGTGCTGGGCGGTGTCTTTAAGAACACCATTGGTAACAACCAAAG
TAAAGTACCTTTTTTGGGTGATTTACCAGGGGTGGGTCGTTTGTTTAGAAATAATGTTAGGCTTAACAACAAAGAAGAGC
TTCTTATCTTTGTCACACCACGCATCGTTAACGACGGCGTTAGTCGCTACTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(236-307)

Bacterial type II and III secretion system protein (Secretin)

(388-543)

Secretin and TonB N terminus short domain (STN)

(162-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

46.735

100

0.495
  pilQ Acinetobacter baumannii strain A118

46.735

100

0.495
  comQ Acinetobacter baylyi ADP1

47.469

100

0.495
  pilQ Pseudomonas aeruginosa PAK

43.369

100

0.44
  pilQ Legionella pneumophila strain Lp02

41.544

98.909

0.411
  pilQ Legionella pneumophila strain ERS1305867

41.36

98.909

0.409
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

38.848

97.818

0.38
  pilQ Vibrio cholerae strain A1552

38.848

97.818

0.38
  pilQ Vibrio campbellii strain DS40M4

35.979

100

0.371