Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | CENROD_RS04750 | Genome accession | NC_022576 |
| Coordinates | 1142163..1143389 (+) | Length | 408 a.a. |
| NCBI ID | WP_022771970.1 | Uniprot ID | U5N6Z1 |
| Organism | Candidatus Symbiobacter mobilis CR | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1137163..1148389
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CENROD_RS04730 (Cenrod_1054) | trxA | 1137580..1137912 (-) | 333 | WP_022771966.1 | thioredoxin | - |
| CENROD_RS04735 (Cenrod_1055) | - | 1138144..1138791 (+) | 648 | WP_022771967.1 | glycine zipper 2TM domain-containing protein | - |
| CENROD_RS04740 (Cenrod_1056) | - | 1138822..1140159 (-) | 1338 | WP_022771968.1 | multifunctional CCA addition/repair protein | - |
| CENROD_RS04745 (Cenrod_1057) | pilF | 1140268..1142016 (+) | 1749 | WP_022771969.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| CENROD_RS04750 (Cenrod_1058) | pilC | 1142163..1143389 (+) | 1227 | WP_022771970.1 | type II secretion system F family protein | Machinery gene |
| CENROD_RS04755 (Cenrod_1059) | - | 1143389..1144297 (+) | 909 | WP_022771971.1 | prepilin peptidase | - |
| CENROD_RS04760 (Cenrod_1060) | coaE | 1144353..1145015 (+) | 663 | WP_022771972.1 | dephospho-CoA kinase | - |
| CENROD_RS04765 (Cenrod_1061) | zapD | 1145050..1145829 (+) | 780 | WP_022771973.1 | cell division protein ZapD | - |
| CENROD_RS13030 (Cenrod_1062) | - | 1145884..1146123 (+) | 240 | WP_022771974.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 408 a.a. Molecular weight: 44531.38 Da Isoelectric Point: 9.1397
>NTDB_id=62858 CENROD_RS04750 WP_022771970.1 1142163..1143389(+) (pilC) [Candidatus Symbiobacter mobilis CR]
MAVSTEKTKTTVKEFVYEWEGKDRGGRQVRGEIRAAGENQAMAALRRQGVTPTKVRKRRMSAGKTIKPKDLAVFTRQLAT
MMKAGVPLLQAFDIVGRGNPNPSITRLLNDIRTDVETGTSLSVAFRKYPLYFDALYCNLVEAGESAGILDQLLDRLATYM
EKTEAMKSKIKSALMYPISVVIVAFVVTAVIMIFVVPAFKEVFANFGAELPGPTLMVIAISEVFVTYWWLIFGGIGGTIY
FFMQAWQRNKKVQLIMDRVMLKVPVFGVLVDKSCVARWTRTLSTMFAAGVPLVEALDSVGGAAGNSVYESATIKIQQEVS
TGTALTAAMTNAHLFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDDMVAGISSLLEPIIIVFLGTVIGGIVVAMYLP
IFKLGQVV
MAVSTEKTKTTVKEFVYEWEGKDRGGRQVRGEIRAAGENQAMAALRRQGVTPTKVRKRRMSAGKTIKPKDLAVFTRQLAT
MMKAGVPLLQAFDIVGRGNPNPSITRLLNDIRTDVETGTSLSVAFRKYPLYFDALYCNLVEAGESAGILDQLLDRLATYM
EKTEAMKSKIKSALMYPISVVIVAFVVTAVIMIFVVPAFKEVFANFGAELPGPTLMVIAISEVFVTYWWLIFGGIGGTIY
FFMQAWQRNKKVQLIMDRVMLKVPVFGVLVDKSCVARWTRTLSTMFAAGVPLVEALDSVGGAAGNSVYESATIKIQQEVS
TGTALTAAMTNAHLFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDDMVAGISSLLEPIIIVFLGTVIGGIVVAMYLP
IFKLGQVV
Nucleotide
Download Length: 1227 bp
>NTDB_id=62858 CENROD_RS04750 WP_022771970.1 1142163..1143389(+) (pilC) [Candidatus Symbiobacter mobilis CR]
ATGGCAGTCAGCACCGAAAAGACCAAGACCACAGTCAAGGAATTCGTCTACGAGTGGGAAGGCAAAGATCGCGGCGGGAG
ACAAGTTCGCGGTGAAATCCGTGCAGCGGGCGAAAACCAGGCCATGGCGGCCCTGCGGCGCCAGGGCGTGACGCCCACCA
AGGTACGCAAGCGCCGCATGAGCGCTGGCAAAACCATCAAGCCCAAAGATTTGGCCGTGTTCACCCGGCAGCTCGCCACG
ATGATGAAGGCCGGCGTGCCCTTGCTGCAAGCCTTCGACATCGTCGGGCGCGGCAACCCCAACCCCAGCATTACCCGCCT
GCTGAACGACATCCGCACTGACGTGGAAACCGGTACCTCGCTAAGCGTCGCGTTCCGCAAATATCCCTTGTATTTCGACG
CCTTGTACTGCAACTTGGTCGAAGCCGGGGAATCCGCCGGTATCCTGGATCAGTTGCTGGACCGGCTCGCCACGTACATG
GAAAAGACCGAGGCGATGAAGTCCAAGATCAAATCCGCGTTGATGTACCCGATTTCTGTCGTCATCGTGGCCTTCGTCGT
GACGGCGGTCATCATGATCTTCGTCGTACCGGCATTCAAGGAGGTGTTCGCCAATTTCGGCGCGGAACTTCCTGGCCCGA
CGCTGATGGTCATCGCGATCAGCGAAGTCTTCGTCACATACTGGTGGCTGATCTTCGGCGGCATCGGCGGAACGATCTAT
TTCTTCATGCAAGCCTGGCAACGCAACAAGAAAGTGCAATTGATCATGGATCGAGTCATGCTGAAGGTGCCAGTCTTCGG
CGTGCTGGTGGACAAATCTTGCGTGGCACGGTGGACGCGCACGCTCTCGACGATGTTCGCTGCGGGGGTTCCGCTCGTCG
AAGCGCTCGACTCCGTCGGCGGCGCCGCCGGCAACTCCGTCTACGAGTCCGCGACGATCAAAATCCAGCAGGAAGTCTCG
ACCGGTACTGCGCTGACTGCTGCGATGACGAACGCCCACCTGTTCCCCTCGATGGTGCTACAGATGTGCGCGATCGGGGA
AGAATCCGGTTCCATCGACCACATGCTCGGCAAGGCCGCAGACTTTTACGAAGCCGAGGTCGATGACATGGTCGCAGGCA
TTTCCAGCCTGCTAGAGCCGATCATCATCGTCTTTCTGGGCACCGTCATCGGTGGCATCGTCGTGGCGATGTACCTGCCC
ATCTTCAAGCTGGGTCAGGTGGTCTGA
ATGGCAGTCAGCACCGAAAAGACCAAGACCACAGTCAAGGAATTCGTCTACGAGTGGGAAGGCAAAGATCGCGGCGGGAG
ACAAGTTCGCGGTGAAATCCGTGCAGCGGGCGAAAACCAGGCCATGGCGGCCCTGCGGCGCCAGGGCGTGACGCCCACCA
AGGTACGCAAGCGCCGCATGAGCGCTGGCAAAACCATCAAGCCCAAAGATTTGGCCGTGTTCACCCGGCAGCTCGCCACG
ATGATGAAGGCCGGCGTGCCCTTGCTGCAAGCCTTCGACATCGTCGGGCGCGGCAACCCCAACCCCAGCATTACCCGCCT
GCTGAACGACATCCGCACTGACGTGGAAACCGGTACCTCGCTAAGCGTCGCGTTCCGCAAATATCCCTTGTATTTCGACG
CCTTGTACTGCAACTTGGTCGAAGCCGGGGAATCCGCCGGTATCCTGGATCAGTTGCTGGACCGGCTCGCCACGTACATG
GAAAAGACCGAGGCGATGAAGTCCAAGATCAAATCCGCGTTGATGTACCCGATTTCTGTCGTCATCGTGGCCTTCGTCGT
GACGGCGGTCATCATGATCTTCGTCGTACCGGCATTCAAGGAGGTGTTCGCCAATTTCGGCGCGGAACTTCCTGGCCCGA
CGCTGATGGTCATCGCGATCAGCGAAGTCTTCGTCACATACTGGTGGCTGATCTTCGGCGGCATCGGCGGAACGATCTAT
TTCTTCATGCAAGCCTGGCAACGCAACAAGAAAGTGCAATTGATCATGGATCGAGTCATGCTGAAGGTGCCAGTCTTCGG
CGTGCTGGTGGACAAATCTTGCGTGGCACGGTGGACGCGCACGCTCTCGACGATGTTCGCTGCGGGGGTTCCGCTCGTCG
AAGCGCTCGACTCCGTCGGCGGCGCCGCCGGCAACTCCGTCTACGAGTCCGCGACGATCAAAATCCAGCAGGAAGTCTCG
ACCGGTACTGCGCTGACTGCTGCGATGACGAACGCCCACCTGTTCCCCTCGATGGTGCTACAGATGTGCGCGATCGGGGA
AGAATCCGGTTCCATCGACCACATGCTCGGCAAGGCCGCAGACTTTTACGAAGCCGAGGTCGATGACATGGTCGCAGGCA
TTTCCAGCCTGCTAGAGCCGATCATCATCGTCTTTCTGGGCACCGTCATCGGTGGCATCGTCGTGGCGATGTACCTGCCC
ATCTTCAAGCTGGGTCAGGTGGTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
55.335 |
98.775 |
0.547 |
| pilG | Neisseria gonorrhoeae MS11 |
51.889 |
97.304 |
0.505 |
| pilC | Legionella pneumophila strain ERS1305867 |
51.515 |
97.059 |
0.5 |
| pilG | Neisseria meningitidis 44/76-A |
51.385 |
97.304 |
0.5 |
| pilC | Acinetobacter baylyi ADP1 |
48.241 |
97.549 |
0.471 |
| pilC | Acinetobacter baumannii D1279779 |
48.111 |
97.304 |
0.468 |
| pilC | Thermus thermophilus HB27 |
39.706 |
100 |
0.397 |
| pilC | Vibrio cholerae strain A1552 |
40.554 |
97.304 |
0.395 |
| pilC | Vibrio campbellii strain DS40M4 |
39.206 |
98.775 |
0.387 |