Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LOY69_RS25610 Genome accession   NZ_CP087201
Coordinates   5771851..5773068 (+) Length   405 a.a.
NCBI ID   WP_102882236.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-059     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5766851..5778068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY69_RS25595 (LOY69_25540) - 5767509..5770427 (+) 2919 WP_265073766.1 DUF748 domain-containing protein -
  LOY69_RS25600 (LOY69_25545) - 5770613..5770969 (-) 357 WP_102865479.1 BON domain-containing protein -
  LOY69_RS25605 (LOY69_25550) - 5771209..5771625 (-) 417 WP_102882235.1 pilin -
  LOY69_RS25610 (LOY69_25555) pilC 5771851..5773068 (+) 1218 WP_102882236.1 type II secretion system F family protein Machinery gene
  LOY69_RS25615 (LOY69_25560) pilD 5773071..5773943 (+) 873 WP_123390445.1 prepilin peptidase Machinery gene
  LOY69_RS25620 (LOY69_25565) coaE 5773940..5774563 (+) 624 WP_265073767.1 dephospho-CoA kinase -
  LOY69_RS25625 (LOY69_25570) yacG 5774560..5774763 (+) 204 WP_102865474.1 DNA gyrase inhibitor YacG -
  LOY69_RS25630 (LOY69_25575) - 5774783..5774998 (-) 216 WP_102865473.1 hypothetical protein -
  LOY69_RS25635 (LOY69_25580) - 5775062..5775751 (-) 690 WP_102882238.1 energy-coupling factor ABC transporter permease -
  LOY69_RS25640 (LOY69_25585) - 5775748..5776215 (-) 468 WP_265073768.1 FAD/FMN-containing dehydrogenase -
  LOY69_RS25645 (LOY69_25590) - 5776361..5776990 (+) 630 WP_102882240.1 DUF1780 domain-containing protein -
  LOY69_RS25650 (LOY69_25595) - 5777179..5777352 (+) 174 WP_043274580.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44198.93 Da        Isoelectric Point: 10.7326

>NTDB_id=628012 LOY69_RS25610 WP_102882236.1 5771851..5773068(+) (pilC) [Pseudomonas sp. B21-059]
MAVKAPVASVYLWQGTDGQGHKLAGELSAANPALIRAQLRRQGITPTRVRRKPRAWLRSGQRIKAREIALFTRQLATLMQ
AGVPLLQAFEIIAESFVQPLMRQLLASLKRDIEAGSSLATALRRHPRHFDELYCNLVEAGEQSGALDTLLERVATHREKS
ENLKARVKKAMVYPVAVIGVAVLVSSILLIKVVPQFQSLFAGFNAQLPLLTQWVITLSHVIQNHGGWLLSAGLLMGVGIR
QAYRRSERLRDSVDQGLLRLPLAGPLLYKAAVARYARTLATTFAAGVPLVQALDSVAGASGNKVFRQAVERIRQQVASGM
QLNFAMRASGVFPTMAIQMTAIGEESGMLDHLLEKVAAHYEVEVDHLVDSLTSLMEPLIMVILGSIVGALVVAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=628012 LOY69_RS25610 WP_102882236.1 5771851..5773068(+) (pilC) [Pseudomonas sp. B21-059]
ATGGCGGTAAAAGCACCTGTGGCCAGCGTCTATCTCTGGCAAGGCACCGACGGCCAGGGCCACAAGTTGGCCGGCGAGCT
GAGCGCTGCAAACCCGGCGCTGATCCGAGCTCAGCTGCGCAGGCAAGGCATCACTCCAACCCGGGTACGCCGCAAGCCCA
GGGCCTGGCTCCGATCGGGCCAACGAATCAAGGCACGGGAGATCGCCCTGTTCACCCGGCAACTGGCAACCCTGATGCAG
GCCGGAGTGCCACTGCTGCAAGCCTTCGAAATCATTGCCGAGAGCTTCGTCCAGCCGTTGATGCGCCAACTGCTGGCCAG
CCTCAAACGCGACATCGAGGCTGGCTCCAGCCTGGCCACAGCGCTGCGCCGACATCCGCGCCACTTTGACGAGCTGTACT
GCAATCTGGTGGAGGCCGGCGAACAGTCCGGCGCCCTGGATACCCTGCTGGAACGGGTCGCCACCCATAGGGAAAAAAGC
GAGAACCTCAAGGCCCGGGTAAAAAAGGCCATGGTCTATCCCGTGGCGGTGATCGGCGTGGCCGTCCTGGTCAGCAGCAT
CCTGCTGATCAAGGTGGTTCCCCAATTCCAGAGCCTGTTCGCCGGGTTCAACGCCCAATTGCCGCTCCTGACCCAATGGG
TCATCACCCTTTCCCATGTCATCCAGAACCACGGCGGATGGTTGCTCAGCGCCGGCCTGCTGATGGGGGTAGGGATCAGG
CAGGCTTATCGGCGCTCGGAGCGCCTGCGGGACAGTGTGGATCAGGGACTGCTACGCCTGCCCTTGGCCGGCCCGCTGCT
GTACAAGGCCGCAGTGGCCCGCTACGCCCGTACGCTGGCCACCACCTTCGCGGCTGGCGTGCCTCTGGTCCAGGCCCTGG
ATTCAGTGGCCGGAGCCAGCGGCAACAAGGTCTTCAGGCAAGCGGTGGAACGCATCCGCCAACAGGTGGCCAGTGGCATG
CAACTGAACTTTGCCATGCGTGCCAGCGGCGTCTTCCCTACTATGGCGATCCAGATGACCGCCATCGGTGAAGAGTCCGG
AATGCTGGATCATCTGCTGGAAAAAGTCGCAGCGCATTATGAGGTCGAGGTGGACCACCTGGTCGACAGCCTGACCAGCC
TCATGGAGCCGTTGATCATGGTCATCCTGGGCAGTATCGTCGGCGCCCTGGTGGTTGCCATGTACCTGCCCATCTTTCAA
CTCGGCACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.272

100

0.583
  pilC Acinetobacter baylyi ADP1

54.523

100

0.551
  pilC Acinetobacter baumannii D1279779

53.186

100

0.536
  pilC Legionella pneumophila strain ERS1305867

48.9

100

0.494
  pilC Vibrio campbellii strain DS40M4

41.791

99.259

0.415
  pilC Vibrio cholerae strain A1552

42.857

96.79

0.415
  pilG Neisseria meningitidis 44/76-A

42.105

98.519

0.415
  pilG Neisseria gonorrhoeae MS11

42.317

98.025

0.415
  pilC Thermus thermophilus HB27

38

98.765

0.375