Detailed information NTG0628013

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LOY69_RS25615
• Genome accession: NZ_CP087201
• Coordinates: 5773071..5773943 (+)
• Length: 290 a.a.
• NCBI ID: WP_123390445.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-059
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5768071..5778943

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY69_RS25600 (LOY69_25545)	-	5770613..5770969 (-)	357	WP_102865479.1	BON domain-containing protein	-
LOY69_RS25605 (LOY69_25550)	-	5771209..5771625 (-)	417	WP_102882235.1	pilin	-
LOY69_RS25610 (LOY69_25555)	pilC	5771851..5773068 (+)	1218	WP_102882236.1	type II secretion system F family protein	Machinery gene
LOY69_RS25615 (LOY69_25560)	pilD	5773071..5773943 (+)	873	WP_123390445.1	prepilin peptidase	Machinery gene
LOY69_RS25620 (LOY69_25565)	coaE	5773940..5774563 (+)	624	WP_265073767.1	dephospho-CoA kinase	-
LOY69_RS25625 (LOY69_25570)	yacG	5774560..5774763 (+)	204	WP_102865474.1	DNA gyrase inhibitor YacG	-
LOY69_RS25630 (LOY69_25575)	-	5774783..5774998 (-)	216	WP_102865473.1	hypothetical protein	-
LOY69_RS25635 (LOY69_25580)	-	5775062..5775751 (-)	690	WP_102882238.1	energy-coupling factor ABC transporter permease	-
LOY69_RS25640 (LOY69_25585)	-	5775748..5776215 (-)	468	WP_265073768.1	FAD/FMN-containing dehydrogenase	-
LOY69_RS25645 (LOY69_25590)	-	5776361..5776990 (+)	630	WP_102882240.1	DUF1780 domain-containing protein	-
LOY69_RS25650 (LOY69_25595)	-	5777179..5777352 (+)	174	WP_043274580.1	DUF3094 family protein	-
LOY69_RS25655 (LOY69_25600)	-	5777413..5778711 (+)	1299	WP_102865469.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32066.28 Da
• Isoelectric Point: 7.3649

>NTDB_id=628013 LOY69_RS25615 WP_123390445.1 5773071..5773943(+) (pilD) [Pseudomonas sp. B21-059]
MSLTEAMTLYPLAFVTAALVLGLLVGSFLNVLVWRLPKMLERDWRAQAHEVLGLPPEPVAAPYNLLLPHSQCPHCAQPIR
PWQNIPLLSYLWLRGRCAHCRTAISPRYPLTELACGLISAYVAWHFGFGWPAGLLLILSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANSFEVLASLEDALWGAVLGYLCLWSVFWLFKLLTGKDGMGHGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AILGTVMLRLNRAKTSTPIPFGPFLAIAGWIALLWGGQMTDFYLQFVGFQ

Nucleotide

• Length: 873 bp

>NTDB_id=628013 LOY69_RS25615 WP_123390445.1 5773071..5773943(+) (pilD) [Pseudomonas sp. B21-059]
ATGTCCTTGACTGAAGCCATGACCCTTTACCCCCTGGCCTTCGTGACTGCGGCCCTGGTACTGGGGCTGCTCGTAGGCAG
CTTTCTGAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTTGAACGCGATTGGCGGGCTCAAGCCCACGAAGTGCTGGGAC
TGCCCCCGGAGCCTGTAGCGGCGCCCTACAACCTGCTGCTGCCCCACTCCCAATGCCCCCATTGCGCACAACCGATCCGC
CCCTGGCAAAACATTCCCCTGCTCAGCTATCTGTGGCTGCGGGGCCGTTGCGCCCACTGCAGGACCGCCATCAGCCCGCG
CTACCCACTAACCGAACTGGCTTGCGGGCTGATCTCGGCGTACGTCGCCTGGCACTTCGGTTTTGGCTGGCCCGCGGGCC
TGCTGCTGATCCTCAGTTGGGGGTTACTGGCCATGAGCCTGATCGATGCCGATCACCAACTGCTGCCAGACGTGCTGGTG
TTGCCACTGCTGTGGCTGGGACTGATTGCCAATAGCTTCGAGGTACTGGCGAGCCTGGAGGATGCCCTGTGGGGCGCGGT
ACTCGGCTATCTGTGCCTGTGGTCAGTGTTCTGGCTGTTCAAATTGCTGACCGGCAAGGACGGCATGGGCCACGGCGACT
TCAAGCTGCTAGCGATGCTTGGCGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCTTGCTCCTGTCCTCTCTGGTGGGA
GCGATTCTCGGCACTGTCATGCTGCGCCTGAACCGGGCCAAGACCTCGACGCCCATCCCCTTCGGCCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATGACCGACTTCTATTTGCAGTTTGTCGGTTTCCAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.035	98.276	0.531
pilD	Vibrio campbellii strain DS40M4	49.291	97.241	0.479
pilD	Acinetobacter baumannii D1279779	49.635	94.483	0.469
pilD	Acinetobacter nosocomialis M2	49.635	94.483	0.469
pilD	Neisseria gonorrhoeae MS11	49.259	93.103	0.459