Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LOY54_RS23145 Genome accession   NZ_CP087180
Coordinates   5022534..5023742 (+) Length   402 a.a.
NCBI ID   WP_258608063.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-032     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5017534..5028742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY54_RS23110 (LOY54_23085) - 5018539..5018766 (+) 228 WP_045197124.1 hypothetical protein -
  LOY54_RS23115 (LOY54_23090) - 5018832..5019134 (+) 303 WP_258608058.1 DUF3077 domain-containing protein -
  LOY54_RS23120 (LOY54_23095) - 5019198..5019566 (+) 369 WP_258608059.1 YcgJ family protein -
  LOY54_RS23125 (LOY54_23100) - 5019633..5020154 (-) 522 WP_258608060.1 hypothetical protein -
  LOY54_RS23130 (LOY54_23105) - 5020686..5021402 (-) 717 WP_258608062.1 DUF4339 domain-containing protein -
  LOY54_RS23140 (LOY54_23115) - 5021906..5022316 (-) 411 WP_093379440.1 pilin -
  LOY54_RS23145 (LOY54_23120) pilC 5022534..5023742 (+) 1209 WP_258608063.1 type II secretion system F family protein Machinery gene
  LOY54_RS23150 (LOY54_23125) pilD 5023745..5024614 (+) 870 WP_258608065.1 A24 family peptidase Machinery gene
  LOY54_RS23155 (LOY54_23130) coaE 5024614..5025237 (+) 624 WP_258608067.1 dephospho-CoA kinase -
  LOY54_RS23160 (LOY54_23135) yacG 5025234..5025434 (+) 201 WP_045200825.1 DNA gyrase inhibitor YacG -
  LOY54_RS23165 (LOY54_23140) - 5025439..5026128 (-) 690 WP_258608069.1 energy-coupling factor ABC transporter permease -
  LOY54_RS23170 (LOY54_23145) - 5026173..5026634 (-) 462 WP_213603237.1 hypothetical protein -
  LOY54_RS23175 (LOY54_23150) - 5026757..5027386 (+) 630 WP_010220617.1 DUF1780 domain-containing protein -
  LOY54_RS23180 (LOY54_23155) - 5027555..5027728 (+) 174 WP_045200819.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43183.72 Da        Isoelectric Point: 10.4634

>NTDB_id=627462 LOY54_RS23145 WP_258608063.1 5022534..5023742(+) (pilC) [Pseudomonas sp. B21-032]
MTESNRMYSWQGTNAQGALISGQSAARSPALIRAQLRQRGIRPGRIASVRQPLWQWRRPLDGKALSQFSRQLATLVKAGV
ALLQALDVVAQSSTNPALASLLGAIKADIAAGSSLATALRRHPQYFDRLYCNLVDAGEQSGSLETVLAQVAALQEQRQAL
RMRLKKAMTYPLLVLLVGFGVSALLLLEVVPRFQSLFGGFGAELPAFTQQVINLSQWLGAHLGWLLITFGGACSALVWAY
RHKPGARLWLVRVALRLPVLGSLLRHAALARFARTLSTSFAAGVPLVEALGPVAGACGNPLYEQAVHKVREDLASGLALN
VALRASGLFPPLVVQMCAIGETAGTLDDMLARIASHYEQAIDHLLDTLTAMLEPLIVLILGLLVGSLVIAMYLPIFQLGN
VI

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=627462 LOY54_RS23145 WP_258608063.1 5022534..5023742(+) (pilC) [Pseudomonas sp. B21-032]
ATGACCGAAAGCAACCGGATGTACAGCTGGCAAGGCACTAACGCTCAGGGCGCCTTGATCAGCGGCCAGAGTGCGGCGCG
CAGCCCGGCGTTGATCAGGGCGCAGTTGCGCCAACGCGGGATTCGCCCGGGGCGTATCGCCAGTGTGCGCCAGCCACTGT
GGCAATGGCGGCGGCCACTGGATGGCAAGGCGCTGAGCCAGTTCAGCCGCCAGCTGGCCACCTTGGTCAAGGCCGGGGTG
GCGCTGTTGCAGGCGTTGGATGTAGTGGCCCAGAGCAGCACTAACCCGGCGCTGGCCAGCCTGCTGGGGGCGATCAAGGC
CGATATCGCCGCTGGCAGCAGCCTGGCCACTGCGCTGCGCCGCCACCCGCAGTACTTCGATCGGCTGTACTGCAACCTGG
TGGATGCCGGTGAGCAGTCCGGCAGCCTGGAGACGGTGCTGGCCCAGGTGGCGGCGCTGCAGGAGCAACGCCAGGCCCTG
CGCATGCGGCTGAAAAAGGCCATGACCTATCCACTGCTGGTGTTGCTGGTGGGCTTTGGGGTGTCGGCGTTGTTATTGCT
GGAGGTGGTGCCGCGCTTTCAGTCGTTGTTCGGCGGTTTTGGTGCCGAGCTGCCGGCGTTTACTCAACAGGTGATCAATT
TGTCGCAGTGGTTGGGGGCGCACCTTGGGTGGCTGTTGATAACGTTTGGCGGCGCTTGCAGTGCGCTGGTTTGGGCTTAT
CGGCACAAGCCTGGGGCGCGTTTGTGGCTGGTGCGCGTGGCGCTGCGCTTGCCGGTGCTCGGCAGCCTGCTCAGGCACGC
CGCCCTCGCCCGCTTTGCCCGTACCCTGTCGACCTCGTTTGCCGCCGGGGTGCCGCTGGTGGAGGCGCTGGGGCCGGTTG
CCGGGGCCTGCGGCAATCCGTTGTATGAGCAGGCGGTGCACAAGGTGCGCGAAGACCTTGCCAGTGGCCTGGCCTTGAAC
GTGGCGTTGCGCGCCAGCGGGTTGTTCCCACCGTTGGTGGTGCAGATGTGCGCCATTGGCGAGACAGCCGGCACGCTGGA
CGATATGCTCGCCAGGATCGCCAGCCATTATGAACAGGCCATCGACCACCTGCTCGACACCCTCACGGCCATGCTCGAGC
CGTTGATCGTGCTGATCCTGGGGTTGCTGGTGGGCAGCCTGGTGATCGCCATGTACCTGCCAATCTTCCAGCTGGGCAAT
GTGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

48.872

99.254

0.485
  pilC Acinetobacter baylyi ADP1

45.636

99.751

0.455
  pilC Legionella pneumophila strain ERS1305867

45.729

99.005

0.453
  pilC Acinetobacter baumannii D1279779

44.836

98.756

0.443
  pilC Vibrio cholerae strain A1552

39.95

99.005

0.396
  pilG Neisseria meningitidis 44/76-A

39.552

100

0.396
  pilC Vibrio campbellii strain DS40M4

39.012

100

0.393
  pilG Neisseria gonorrhoeae MS11

39.303

100

0.393
  pilC Thermus thermophilus HB27

37.656

99.751

0.376