Detailed information NTG0627463

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LOY54_RS23150
• Genome accession: NZ_CP087180
• Coordinates: 5023745..5024614 (+)
• Length: 289 a.a.
• NCBI ID: WP_258608065.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-032
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5018745..5029614

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY54_RS23115 (LOY54_23090)	-	5018832..5019134 (+)	303	WP_258608058.1	DUF3077 domain-containing protein	-
LOY54_RS23120 (LOY54_23095)	-	5019198..5019566 (+)	369	WP_258608059.1	YcgJ family protein	-
LOY54_RS23125 (LOY54_23100)	-	5019633..5020154 (-)	522	WP_258608060.1	hypothetical protein	-
LOY54_RS23130 (LOY54_23105)	-	5020686..5021402 (-)	717	WP_258608062.1	DUF4339 domain-containing protein	-
LOY54_RS23140 (LOY54_23115)	-	5021906..5022316 (-)	411	WP_093379440.1	pilin	-
LOY54_RS23145 (LOY54_23120)	pilC	5022534..5023742 (+)	1209	WP_258608063.1	type II secretion system F family protein	Machinery gene
LOY54_RS23150 (LOY54_23125)	pilD	5023745..5024614 (+)	870	WP_258608065.1	A24 family peptidase	Machinery gene
LOY54_RS23155 (LOY54_23130)	coaE	5024614..5025237 (+)	624	WP_258608067.1	dephospho-CoA kinase	-
LOY54_RS23160 (LOY54_23135)	yacG	5025234..5025434 (+)	201	WP_045200825.1	DNA gyrase inhibitor YacG	-
LOY54_RS23165 (LOY54_23140)	-	5025439..5026128 (-)	690	WP_258608069.1	energy-coupling factor ABC transporter permease	-
LOY54_RS23170 (LOY54_23145)	-	5026173..5026634 (-)	462	WP_213603237.1	hypothetical protein	-
LOY54_RS23175 (LOY54_23150)	-	5026757..5027386 (+)	630	WP_010220617.1	DUF1780 domain-containing protein	-
LOY54_RS23180 (LOY54_23155)	-	5027555..5027728 (+)	174	WP_045200819.1	DUF3094 family protein	-
LOY54_RS23185 (LOY54_23160)	-	5027813..5029108 (+)	1296	WP_045200816.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31891.07 Da
• Isoelectric Point: 8.0488

>NTDB_id=627463 LOY54_RS23150 WP_258608065.1 5023745..5024614(+) (pilD) [Pseudomonas sp. B21-032]
MNLLNTLASQPLMYLSFALLLGLIVGSFLNVLVHRLPIMLERQWQAEAREVLALPSEAQAPRFDLFLPPSQCPHCAHRIR
PWENIPVVSYLALRGRCSACQARISPRYPLVEIACGALTLFAAWHLGFTAAALALMVLSWGLLAMSLIDIEHHLLPDALV
LPLLWLGLIANAFELFVPLEDALWGTVAGYLSLWSVFWVFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLLG
AVIGLVMLRLQRKQASTPIPFGPYLAIAGWIALLWGGQITTSYLKYSGF

Nucleotide

• Length: 870 bp

>NTDB_id=627463 LOY54_RS23150 WP_258608065.1 5023745..5024614(+) (pilD) [Pseudomonas sp. B21-032]
ATGAACCTGTTGAACACCCTGGCCAGCCAGCCACTGATGTACCTGAGCTTCGCCCTGTTGCTCGGGCTGATTGTCGGCAG
TTTTCTCAATGTGCTGGTGCATCGCCTGCCGATCATGCTCGAACGCCAATGGCAGGCCGAGGCCCGTGAGGTGCTGGCGT
TGCCCAGCGAGGCACAAGCGCCGCGCTTCGACCTGTTTTTACCGCCCTCGCAATGCCCGCATTGCGCCCACCGCATTCGC
CCGTGGGAAAACATACCGGTGGTGAGTTACCTGGCCTTGCGCGGGCGCTGTTCCGCTTGCCAGGCGCGCATCAGCCCGCG
CTACCCGCTGGTGGAAATTGCCTGCGGGGCGCTGACGCTGTTTGCCGCCTGGCATCTGGGTTTTACCGCCGCGGCCCTGG
CGTTGATGGTGCTGAGTTGGGGCCTGCTGGCCATGAGCTTGATCGATATCGAGCACCATCTGTTGCCCGATGCCCTGGTG
CTGCCGTTGTTGTGGCTGGGGCTGATCGCCAATGCCTTTGAGCTGTTCGTGCCGCTGGAGGATGCCCTGTGGGGCACGGT
GGCCGGTTACCTGAGCCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGGTCACCGGCAAAGAGGGCATGGGCTATGGCGATT
TCAAGTTGCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGATTTTGCCGCTGACCTTGCTGTTGTCGTCGCTGCTGGGG
GCGGTGATCGGCCTGGTTATGCTGCGCCTGCAGCGCAAGCAGGCGAGCACGCCGATCCCCTTTGGTCCCTATCTGGCCAT
TGCGGGCTGGATCGCGCTGCTCTGGGGTGGTCAAATAACCACTTCCTATCTGAAATATTCCGGATTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.214	96.886	0.516
pilD	Vibrio campbellii strain DS40M4	48.601	98.962	0.481
pilD	Acinetobacter baumannii D1279779	48.175	94.81	0.457
pilD	Acinetobacter nosocomialis M2	47.445	94.81	0.45
pilD	Neisseria gonorrhoeae MS11	48.627	88.235	0.429