Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LNB41_RS03960 Genome accession   NZ_CP086592
Coordinates   805462..805920 (+) Length   152 a.a.
NCBI ID   WP_115253304.1    Uniprot ID   -
Organism   Enterococcus faecalis strain Fac74     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 800462..810920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNB41_RS15225 - 801704..801838 (+) 135 Protein_758 amidase -
  LNB41_RS03925 (LNB41_03925) - 801841..802458 (+) 618 WP_104670752.1 hypothetical protein -
  LNB41_RS03930 (LNB41_03930) - 802442..802858 (+) 417 WP_181033966.1 thioredoxin family protein -
  LNB41_RS03935 (LNB41_03935) - 802858..803172 (+) 315 WP_002360796.1 hypothetical protein -
  LNB41_RS03940 (LNB41_03940) - 803165..804199 (+) 1035 WP_002385553.1 conjugal transfer protein -
  LNB41_RS03945 (LNB41_03945) - 804204..804464 (+) 261 WP_010706916.1 hypothetical protein -
  LNB41_RS03950 (LNB41_03950) - 804464..804853 (+) 390 WP_002360791.1 TcpE family conjugal transfer membrane protein -
  LNB41_RS03955 (LNB41_03955) - 804885..805367 (+) 483 WP_002360790.1 hypothetical protein -
  LNB41_RS03960 (LNB41_03960) ssb 805462..805920 (+) 459 WP_115253304.1 single-stranded DNA-binding protein Machinery gene
  LNB41_RS03965 (LNB41_03965) - 806025..808517 (+) 2493 WP_229023957.1 ATP-binding protein -
  LNB41_RS03970 (LNB41_03970) - 808474..808878 (+) 405 WP_002400624.1 hypothetical protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17152.06 Da        Isoelectric Point: 4.6511

>NTDB_id=625617 LNB41_RS03960 WP_115253304.1 805462..805920(+) (ssb) [Enterococcus faecalis strain Fac74]
MINNVTLVGRLTKDPDLRYTQSGTAVGQFTLAINRNFTNASNEREADFINCVIWRKAAESLANYATKGTLIGLTGRIQTR
NYENQQGQRIYVTEVVTESFQLLESREVNEQRKEQATGKATFDKQSMDKPDPLDPFSPENSIVDISDNDLPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=625617 LNB41_RS03960 WP_115253304.1 805462..805920(+) (ssb) [Enterococcus faecalis strain Fac74]
TTGATTAATAACGTTACATTAGTTGGACGATTAACCAAAGACCCAGATTTAAGGTATACGCAAAGTGGAACAGCCGTAGG
TCAATTTACGTTGGCCATTAATCGCAACTTTACCAATGCTAGCAATGAAAGGGAAGCAGATTTTATCAACTGTGTTATTT
GGCGGAAAGCTGCAGAGTCATTAGCAAATTATGCAACAAAAGGGACTCTGATCGGTTTAACTGGTCGCATTCAAACAAGA
AACTATGAGAATCAACAAGGCCAGCGTATTTATGTAACTGAGGTTGTCACAGAAAGCTTCCAACTATTAGAATCAAGAGA
AGTAAACGAGCAACGAAAAGAACAGGCTACAGGTAAAGCTACGTTTGATAAACAGTCAATGGATAAACCTGATCCTCTGG
ATCCATTTTCGCCAGAAAATAGCATAGTGGATATTTCTGATAATGACCTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

55.882

100

0.625
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.826

100

0.579
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

69.737

0.401
  ssbB Streptococcus sobrinus strain NIDR 6715-7

53.774

69.737

0.375
  ssbB/cilA Streptococcus mitis NCTC 12261

49.138

76.316

0.375
  ssbB/cilA Streptococcus pneumoniae TIGR4

48.276

76.316

0.368
  ssbB/cilA Streptococcus pneumoniae Rx1

47.414

76.316

0.362
  ssbB/cilA Streptococcus pneumoniae D39

47.414

76.316

0.362
  ssbB/cilA Streptococcus pneumoniae R6

47.414

76.316

0.362
  ssbB/cilA Streptococcus mitis SK321

47.414

76.316

0.362