Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LMK00_RS04285 Genome accession   NZ_CP086395
Coordinates   872308..872769 (+) Length   153 a.a.
NCBI ID   WP_252170346.1    Uniprot ID   A0A9Q8Y3X9
Organism   Lactococcus formosensis strain I4/6O     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 867308..877769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMK00_RS04260 (LMK00_04260) - 868472..869188 (+) 717 WP_252170341.1 hypothetical protein -
  LMK00_RS04265 (LMK00_04265) - 869886..870767 (+) 882 WP_252175774.1 hypothetical protein -
  LMK00_RS04270 (LMK00_04270) - 870791..870991 (+) 201 WP_252170343.1 hypothetical protein -
  LMK00_RS04275 (LMK00_04275) - 870981..871193 (+) 213 WP_252170344.1 hypothetical protein -
  LMK00_RS04280 (LMK00_04280) - 872029..872280 (+) 252 WP_252170345.1 hypothetical protein -
  LMK00_RS04285 (LMK00_04285) ssb 872308..872769 (+) 462 WP_252170346.1 single-stranded DNA-binding protein Machinery gene
  LMK00_RS04290 (LMK00_04290) - 872876..873190 (+) 315 WP_252170347.1 hypothetical protein -
  LMK00_RS04295 (LMK00_04295) - 873204..873530 (+) 327 WP_252170348.1 hypothetical protein -
  LMK00_RS04300 (LMK00_04300) - 873552..873887 (+) 336 WP_252170349.1 hypothetical protein -
  LMK00_RS04305 (LMK00_04305) - 873916..874608 (+) 693 WP_252170350.1 hypothetical protein -
  LMK00_RS04310 (LMK00_04310) - 874764..875330 (-) 567 WP_252175775.1 recombinase family protein -
  LMK00_RS04315 (LMK00_04315) - 875884..877656 (+) 1773 WP_252170352.1 DUF262 domain-containing protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 16926.89 Da        Isoelectric Point: 5.9277

>NTDB_id=624747 LMK00_RS04285 WP_252170346.1 872308..872769(+) (ssb) [Lactococcus formosensis strain I4/6O]
MINNVTLVGRLVRDPELRYTPQNTAVATFTIAVNRRFKNAQGEREADFINCVIWRQSAENLANWAKKGALIGVTGSIQVR
NYENKEGRRVYVTEVLADNFQMLESRATREGGHPAAPAAQNTTPGKTGTPDFGRNSDPFGGEPMEISDDDLPF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=624747 LMK00_RS04285 WP_252170346.1 872308..872769(+) (ssb) [Lactococcus formosensis strain I4/6O]
ATGATAAATAACGTTACCTTAGTCGGACGTCTTGTACGTGATCCTGAACTCCGATATACTCCCCAAAATACTGCAGTAGC
GACTTTTACTATAGCAGTAAATCGTCGCTTTAAAAATGCACAAGGTGAGCGTGAAGCAGATTTCATTAATTGTGTTATCT
GGCGTCAATCCGCTGAAAACTTGGCCAATTGGGCTAAGAAAGGGGCATTAATTGGAGTGACCGGAAGTATTCAAGTACGA
AATTATGAAAACAAAGAAGGTCGACGTGTATATGTGACTGAAGTATTGGCAGATAATTTCCAAATGCTTGAGAGCCGTGC
AACACGTGAAGGTGGGCATCCTGCAGCACCTGCAGCACAAAATACTACACCTGGAAAAACTGGTACTCCAGACTTCGGGC
GTAATAGTGATCCATTTGGAGGCGAACCTATGGAAATCTCTGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

55.556

100

0.621
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.326

100

0.588
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

69.281

0.405
  ssbB/cilA Streptococcus pneumoniae TIGR4

55.046

71.242

0.392
  ssbB/cilA Streptococcus mitis NCTC 12261

54.128

71.242

0.386
  ssbB/cilA Streptococcus pneumoniae Rx1

54.128

71.242

0.386
  ssbB/cilA Streptococcus pneumoniae D39

54.128

71.242

0.386
  ssbB/cilA Streptococcus pneumoniae R6

54.128

71.242

0.386
  ssbB/cilA Streptococcus mitis SK321

54.128

71.242

0.386
  ssbB Streptococcus sobrinus strain NIDR 6715-7

53.211

71.242

0.379