Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   YB51_RS00800 Genome accession   NC_022516
Coordinates   127276..128226 (+) Length   316 a.a.
NCBI ID   WP_013730075.1    Uniprot ID   -
Organism   Streptococcus suis YB51     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 122276..133226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YB51_RS00790 (YB51_0640) - 125840..126205 (+) 366 WP_002936568.1 DUF1033 family protein -
  YB51_RS00795 (YB51_0645) - 126240..127190 (-) 951 WP_002936565.1 S66 peptidase family protein -
  YB51_RS00800 (YB51_0650) comYA 127276..128226 (+) 951 WP_013730075.1 competence type IV pilus ATPase ComGA Machinery gene
  YB51_RS00805 (YB51_0655) comYB 128138..129175 (+) 1038 WP_255195823.1 competence type IV pilus assembly protein ComGB Machinery gene
  YB51_RS00810 (YB51_0660) comYC 129177..129458 (+) 282 WP_009909092.1 competence type IV pilus major pilin ComGC Machinery gene
  YB51_RS00815 (YB51_0665) comGD 129439..129846 (+) 408 WP_009909093.1 competence type IV pilus minor pilin ComGD -
  YB51_RS00820 (YB51_0670) comYE 129818..130111 (+) 294 WP_024390433.1 competence type IV pilus minor pilin ComGE Machinery gene
  YB51_RS00825 (YB51_0675) comGF/cglF 130098..130532 (+) 435 WP_009909097.1 competence type IV pilus minor pilin ComGF Machinery gene
  YB51_RS00830 (YB51_0680) comGG 130510..130920 (+) 411 WP_009909099.1 competence type IV pilus minor pilin ComGG -
  YB51_RS00835 (YB51_0685) comYH 130977..131930 (+) 954 WP_013730077.1 class I SAM-dependent methyltransferase Machinery gene
  YB51_RS00840 (YB51_0690) - 131980..133167 (+) 1188 WP_013730078.1 acetate kinase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35447.36 Da        Isoelectric Point: 5.9423

>NTDB_id=62429 YB51_RS00800 WP_013730075.1 127276..128226(+) (comYA) [Streptococcus suis YB51]
MIQEKARKLIEKAVADRVSDIYLVPRGESYQVYHRIMDEREFVQDLAEEEVTAIISHFKFLAGLNVGEKLRSQQGSCDYD
YGSGEISLRLSTVGDYRGKESLVIRLLYDNDKELKFWFEAAERLAEEIKGRGLYLFSGPVGSGKTTLMYHLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVIRASLTGATVFSTVHARSISGVY
ARMLELGVSPEELNNALQGIAYQRLIRGGGVVDFAKGNYQNHSADQWNAQIDRLFAAGHISLRQAETEKIALGSPA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=62429 YB51_RS00800 WP_013730075.1 127276..128226(+) (comYA) [Streptococcus suis YB51]
ATGATTCAAGAAAAAGCAAGAAAGTTGATTGAAAAGGCAGTGGCGGATAGGGTCAGTGACATTTATCTGGTTCCTCGCGG
GGAAAGCTATCAAGTTTATCATCGCATCATGGATGAACGGGAGTTTGTGCAAGACTTGGCTGAGGAGGAAGTAACAGCCA
TCATCAGCCATTTCAAGTTTTTAGCAGGTTTAAATGTTGGTGAAAAACTCCGTAGCCAGCAGGGTTCCTGTGACTATGAT
TATGGTAGCGGAGAGATTTCACTTCGCTTATCAACTGTCGGAGATTATCGTGGCAAGGAAAGTCTGGTGATCCGCTTGCT
CTATGACAATGACAAGGAACTCAAGTTCTGGTTTGAGGCGGCTGAGCGGCTTGCAGAAGAAATCAAGGGACGAGGGCTCT
ACCTTTTTTCGGGTCCAGTCGGCTCTGGTAAGACCACACTTATGTACCATCTTGCCAGGCTGAAATTCCCAGACAAGCAG
ATTTTGACCATCGAGGATCCTGTCGAAATCAAACAGGAGGACATGCTGCAACTCCAGCTCAATGAAGCCATCGGAGCCAC
CTACGACAATCTGATCAAACTGTCCCTCCGTCATCGACCAGACTTGCTCATCATCGGTGAAATTCGGGATGCGGAAACCG
CTCGAGCAGTCATTCGAGCCAGTCTGACAGGAGCGACGGTCTTCTCAACGGTTCACGCAAGGTCTATTTCGGGTGTCTAT
GCTCGTATGTTGGAATTGGGGGTCAGTCCTGAGGAGTTAAACAATGCCCTTCAAGGTATTGCCTATCAACGTTTAATCAG
GGGAGGAGGTGTGGTAGATTTTGCAAAGGGAAATTACCAAAACCATTCCGCAGACCAGTGGAATGCGCAAATTGATCGCC
TTTTTGCAGCAGGACATATCAGTCTTAGGCAGGCAGAAACAGAAAAAATTGCCCTTGGCTCGCCAGCGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus gordonii str. Challis substr. CH1

68.065

98.101

0.668
  comYA Streptococcus mutans UA159

67.203

98.418

0.661
  comYA Streptococcus mutans UA140

67.203

98.418

0.661
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

64.63

98.418

0.636
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

64.63

98.418

0.636
  comGA/cglA/cilD Streptococcus pneumoniae D39

64.63

98.418

0.636
  comGA/cglA/cilD Streptococcus pneumoniae R6

64.63

98.418

0.636
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

64.63

98.418

0.636
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

64.516

98.101

0.633
  comGA Lactococcus lactis subsp. cremoris KW2

53.628

100

0.538
  comGA Latilactobacillus sakei subsp. sakei 23K

41.155

87.658

0.361

Multiple sequence alignment