Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LJX92_RS03930 Genome accession   NZ_CP086206
Coordinates   885831..887039 (-) Length   402 a.a.
NCBI ID   WP_228309333.1    Uniprot ID   -
Organism   Pseudomonas sp. HN8-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 880831..892039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJX92_RS03890 (LJX92_03900) - 880838..882136 (-) 1299 WP_228309332.1 NAD(P)/FAD-dependent oxidoreductase -
  LJX92_RS03895 (LJX92_03905) - 882197..882370 (-) 174 WP_005784671.1 DUF3094 family protein -
  LJX92_RS03900 (LJX92_03910) - 882424..883053 (-) 630 WP_003188431.1 DUF1780 domain-containing protein -
  LJX92_RS03905 (LJX92_03915) - 883183..883872 (+) 690 WP_032877845.1 energy-coupling factor ABC transporter permease -
  LJX92_RS03910 (LJX92_03920) - 883939..884154 (+) 216 WP_003171680.1 hypothetical protein -
  LJX92_RS03915 (LJX92_03925) yacG 884151..884351 (-) 201 WP_003188437.1 DNA gyrase inhibitor YacG -
  LJX92_RS03920 (LJX92_03930) coaE 884348..884971 (-) 624 WP_103734653.1 dephospho-CoA kinase -
  LJX92_RS03925 (LJX92_03935) pilD 884968..885834 (-) 867 WP_323134836.1 A24 family peptidase Machinery gene
  LJX92_RS03930 (LJX92_03940) pilC 885831..887039 (-) 1209 WP_228309333.1 type II secretion system F family protein Machinery gene
  LJX92_RS03935 (LJX92_03945) - 887239..887652 (+) 414 WP_005784685.1 pilin -
  LJX92_RS03945 (LJX92_03955) - 887939..888244 (+) 306 WP_032877840.1 DUF6388 family protein -
  LJX92_RS03950 (LJX92_03960) nadC 888319..889167 (-) 849 WP_032877839.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LJX92_RS03955 (LJX92_03965) - 889413..891566 (+) 2154 WP_228309334.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43891.33 Da        Isoelectric Point: 10.0984

>NTDB_id=623668 LJX92_RS03930 WP_228309333.1 885831..887039(-) (pilC) [Pseudomonas sp. HN8-3]
MNDTSTIYAWEGTNRKGRRVTGQTAGDSLALIKAQLRQQGICPERVRKRPRSRSAFTPRILPADIALFTRQLATLLKAGI
PLLQAFDIISEGFENQQVRELVKALKQQIASGNNLAAALRLHPRYFDDLYCNLVAAGEQAGALETLLERVAIHLEKSQQL
KARIKKAMTYPVAVLVVATLVSTVLLIHVVPQFQHMFAGVDSQLPGFTLGVIALSEFLQQAWWILVLGLAVGVGGLRHAY
RRYPGFRHWLQASLLKAPLAGKLLQKTAVARYARTLSTTFAAGVPLVQALGSVAGAVGNDPFKQAIERMRHDVSTGMQLN
QSMHSCGLFPGMAIQMTAIGEESGTLDRMLEKVANHYESDVDTLVDNLTSLMEPLIMVVLGAIVGALVIAMYLPVFQLGT
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=623668 LJX92_RS03930 WP_228309333.1 885831..887039(-) (pilC) [Pseudomonas sp. HN8-3]
ATGAACGACACGTCAACGATCTATGCCTGGGAAGGCACCAACCGCAAAGGACGCAGGGTGACCGGGCAAACCGCTGGCGA
CAGCCTTGCGCTGATCAAGGCACAACTGCGCCAGCAAGGGATCTGCCCCGAGCGTGTGCGCAAGAGGCCTCGATCACGTT
CGGCTTTCACCCCGCGAATCCTGCCAGCCGATATCGCCCTGTTTACCCGACAGTTGGCGACCTTGCTCAAAGCCGGGATC
CCGCTGCTGCAAGCCTTCGACATCATCAGTGAGGGTTTTGAAAACCAGCAGGTGCGTGAACTGGTCAAGGCGTTGAAACA
ACAGATCGCCAGCGGCAATAACCTGGCCGCAGCGCTACGCCTGCACCCGCGTTATTTCGATGACCTGTACTGCAACCTGG
TAGCTGCCGGAGAACAGGCCGGGGCTCTGGAAACCCTGCTGGAGCGCGTGGCGATTCATCTGGAAAAAAGCCAACAGCTC
AAAGCCAGGATCAAAAAAGCCATGACTTACCCTGTCGCAGTCCTGGTAGTCGCGACACTGGTCAGCACAGTGCTGTTGAT
ACACGTCGTGCCTCAGTTCCAGCATATGTTTGCCGGGGTCGACAGCCAACTGCCCGGGTTTACCCTGGGGGTCATTGCCC
TGTCCGAGTTCTTGCAACAAGCGTGGTGGATACTCGTGCTGGGCCTGGCCGTGGGGGTGGGCGGGCTGCGCCACGCCTAC
CGCCGTTACCCTGGCTTTCGCCATTGGCTGCAAGCGAGTTTGTTGAAAGCGCCTCTGGCAGGCAAACTGCTGCAAAAAAC
CGCCGTCGCCCGCTACGCCCGCACGCTTTCGACCACATTTGCAGCGGGTGTCCCGCTGGTCCAGGCACTGGGCTCAGTAG
CCGGAGCCGTCGGCAATGACCCCTTCAAACAGGCAATCGAACGTATGCGCCACGATGTATCCACAGGCATGCAGTTGAAT
CAATCCATGCACAGCTGCGGTTTGTTTCCCGGCATGGCGATCCAGATGACCGCCATTGGAGAGGAGTCCGGCACCCTGGA
CCGGATGCTGGAAAAAGTCGCGAACCACTACGAGTCGGACGTAGACACCCTGGTCGATAACCTCACCAGCCTGATGGAGC
CGCTGATCATGGTTGTCCTGGGGGCCATTGTCGGCGCGCTGGTGATCGCGATGTACCTGCCGGTCTTTCAATTGGGTACG
GCCTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.69

98.756

0.58
  pilC Acinetobacter baylyi ADP1

50.253

98.507

0.495
  pilC Acinetobacter baumannii D1279779

48.861

98.259

0.48
  pilC Legionella pneumophila strain ERS1305867

47.848

98.259

0.47
  pilG Neisseria gonorrhoeae MS11

39.34

98.01

0.386
  pilC Vibrio cholerae strain A1552

39.34

98.01

0.386
  pilC Thermus thermophilus HB27

37.871

100

0.381
  pilG Neisseria meningitidis 44/76-A

38.579

98.01

0.378
  pilC Vibrio campbellii strain DS40M4

38.228

98.259

0.376