Detailed information NTG0623667

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LJX92_RS03925
• Genome accession: NZ_CP086206
• Coordinates: 884968..885834 (-)
• Length: 288 a.a.
• NCBI ID: WP_323134836.1
• Uniprot ID: -
• Organism: Pseudomonas sp. HN8-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 879968..890834

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LJX92_RS03890 (LJX92_03900)	-	880838..882136 (-)	1299	WP_228309332.1	NAD(P)/FAD-dependent oxidoreductase	-
LJX92_RS03895 (LJX92_03905)	-	882197..882370 (-)	174	WP_005784671.1	DUF3094 family protein	-
LJX92_RS03900 (LJX92_03910)	-	882424..883053 (-)	630	WP_003188431.1	DUF1780 domain-containing protein	-
LJX92_RS03905 (LJX92_03915)	-	883183..883872 (+)	690	WP_032877845.1	energy-coupling factor ABC transporter permease	-
LJX92_RS03910 (LJX92_03920)	-	883939..884154 (+)	216	WP_003171680.1	hypothetical protein	-
LJX92_RS03915 (LJX92_03925)	yacG	884151..884351 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
LJX92_RS03920 (LJX92_03930)	coaE	884348..884971 (-)	624	WP_103734653.1	dephospho-CoA kinase	-
LJX92_RS03925 (LJX92_03935)	pilD	884968..885834 (-)	867	WP_323134836.1	A24 family peptidase	Machinery gene
LJX92_RS03930 (LJX92_03940)	pilC	885831..887039 (-)	1209	WP_228309333.1	type II secretion system F family protein	Machinery gene
LJX92_RS03935 (LJX92_03945)	-	887239..887652 (+)	414	WP_005784685.1	pilin	-
LJX92_RS03945 (LJX92_03955)	-	887939..888244 (+)	306	WP_032877840.1	DUF6388 family protein	-
LJX92_RS03950 (LJX92_03960)	nadC	888319..889167 (-)	849	WP_032877839.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31921.24 Da
• Isoelectric Point: 7.8695

>NTDB_id=623667 LJX92_RS03925 WP_323134836.1 884968..885834(-) (pilD) [Pseudomonas sp. HN8-3]
MSLLLSEQHWAFACMALVLGLIIGSFINVLVWRLPKMLEREWRAQAHEVLGLPTEPAGPVYNLMRPSSCCPRCNQPIRPW
ENIPLLSFLMLRGRCAHCREPISVRYPLTEVTCALITAAVAWHFGFGWQAAAVMLLSWGLLAMSLIDLDHQLLPDALVLP
LLWLGLVINSADLLATLPDALWGAVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLMGVF
AGLILLRLRKAQTSTPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=623667 LJX92_RS03925 WP_323134836.1 884968..885834(-) (pilD) [Pseudomonas sp. HN8-3]
TTGAGCCTGCTGCTGAGCGAGCAGCACTGGGCGTTTGCCTGCATGGCACTGGTGCTCGGCCTGATCATCGGCAGTTTCAT
CAACGTACTGGTCTGGCGCCTGCCCAAAATGCTCGAACGCGAATGGCGTGCCCAGGCCCATGAGGTCCTTGGCCTGCCAA
CCGAGCCCGCCGGTCCGGTGTACAACCTGATGCGCCCGAGCTCCTGCTGTCCGCGCTGCAACCAGCCGATTCGGCCCTGG
GAAAATATCCCGCTGCTCAGCTTCCTGATGCTCAGGGGTCGTTGCGCCCATTGCCGTGAGCCCATCAGCGTCCGCTATCC
CCTGACCGAAGTGACGTGCGCGCTGATCACCGCGGCCGTTGCCTGGCATTTCGGCTTCGGCTGGCAAGCCGCTGCGGTGA
TGTTGCTGAGCTGGGGCTTGCTGGCCATGAGCCTGATTGACCTGGACCACCAATTGCTGCCGGACGCGCTGGTCCTGCCG
CTGCTCTGGCTGGGGCTGGTTATCAACAGCGCTGACCTGTTGGCGACACTGCCCGACGCACTGTGGGGCGCGGTCATTGG
CTACATGAGCCTATGGAGCGTGTTCTGGTTGTTCAAGCTGGTCACCGGCAAGGATGGCATGGGCCATGGCGATTTCAAGT
TATTGGCATTGCTGGGAGCCTGGGGTGGCTGGCAGATCCTGCCGATGACGTTGCTGATGGCCTCACTGATGGGCGTGTTT
GCAGGGCTGATCCTGCTGCGTTTGCGCAAGGCCCAAACGTCGACGCCGATGCCCTTTGGGCCGTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.33	96.875	0.507
pilD	Vibrio campbellii strain DS40M4	48.921	96.528	0.472
pilD	Acinetobacter baumannii D1279779	47.101	95.833	0.451
pilD	Acinetobacter nosocomialis M2	47.101	95.833	0.451
pilD	Neisseria gonorrhoeae MS11	46.875	88.889	0.417