Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LJY22_RS14685 Genome accession   NZ_CP085843
Coordinates   3183703..3184812 (-) Length   369 a.a.
NCBI ID   WP_257897062.1    Uniprot ID   -
Organism   Vibrio diabolicus strain NV27     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3178703..3189812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY22_RS14655 (LJY22_14645) hemF 3179164..3180081 (-) 918 WP_006742931.1 oxygen-dependent coproporphyrinogen oxidase -
  LJY22_RS14660 (LJY22_14650) - 3180129..3180686 (-) 558 WP_005394015.1 L-threonylcarbamoyladenylate synthase -
  LJY22_RS14665 (LJY22_14655) purE 3180886..3181371 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  LJY22_RS14670 (LJY22_14660) - 3181376..3182503 (+) 1128 WP_257897060.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  LJY22_RS14675 (LJY22_14665) - 3182573..3183142 (-) 570 WP_257897061.1 type I DNA topoisomerase -
  LJY22_RS14680 (LJY22_14670) - 3183221..3183700 (-) 480 WP_005379074.1 DUF494 family protein -
  LJY22_RS14685 (LJY22_14675) dprA 3183703..3184812 (-) 1110 WP_257897062.1 DNA-processing protein DprA Machinery gene
  LJY22_RS14690 (LJY22_14680) - 3184796..3185890 (-) 1095 WP_257897063.1 LysM peptidoglycan-binding domain-containing protein -
  LJY22_RS14695 (LJY22_14685) def 3186029..3186547 (+) 519 WP_005461416.1 peptide deformylase -
  LJY22_RS14700 (LJY22_14690) fmt 3186581..3187528 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  LJY22_RS14705 (LJY22_14695) rsmB 3187609..3188892 (+) 1284 WP_005394040.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40097.81 Da        Isoelectric Point: 6.7175

>NTDB_id=620828 LJY22_RS14685 WP_257897062.1 3183703..3184812(-) (dprA) [Vibrio diabolicus strain NV27]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDTPCNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLIWLEASTNHH
ILTLTDPRYPPQLKQIVAPPPLLFVQGNPTCLSQPQIAMVGSRNASIDGLQHARHFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAKGKTIAVLGSGLDNIYPARHRGLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAERSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=620828 LJY22_RS14685 WP_257897062.1 3183703..3184812(-) (dprA) [Vibrio diabolicus strain NV27]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGCGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCATGTAACATCGTAAACTTCTCTCCTGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTCGATGCTTGTTTAATCTGGCTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCGCGTTATCCACCTCAACTCAAACAAATCGTTGCACCGCCACCTCTACTTTTTGTTCAAGG
AAACCCTACTTGTCTCTCTCAGCCACAAATAGCAATGGTTGGCAGCCGAAACGCGAGTATTGATGGCTTACAGCATGCAC
GCCACTTTGCCGCAGAATTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGCCATGCGCAT
GATGGTGCGTTGCAAGCAAAAGGTAAGACGATTGCGGTGCTGGGATCTGGCTTAGACAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAACATGGGGCTTTGGTGTCTGAGTTTCGCCCCAACGCCAAGCCGCGCCCGGAAAACT
TCCCGCGTCGAAACCGCATTATTAGCGGATTATCGCTAGGTGTGTTAGTTGTGGAAGCGGCGGAAAGGAGTGGCTCGTTA
ATTACTGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTGTTTGCGCTGCCAGCTTCGATAAATGCCCCTAATGCCAGTGG
TGGCAACCAATTGATACGTCATGGTGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCTTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAGGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.198

100

0.832
  dprA Vibrio cholerae strain A1552

56.757

100

0.569
  dprA Glaesserella parasuis strain SC1401

47.043

100

0.474
  dprA Legionella pneumophila strain ERS1305867

44.598

97.832

0.436
  dprA Haemophilus influenzae Rd KW20

45.245

94.038

0.425
  dprA Neisseria meningitidis strain C311

37.374

100

0.401
  dprA Neisseria meningitidis MC58

37.374

100

0.401
  dprA Neisseria gonorrhoeae MS11

36.041

100

0.385
  dprA Neisseria gonorrhoeae strain FA1090

35.787

100

0.382
  dprA Acinetobacter baylyi ADP1

38.44

97.29

0.374