Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HWQ47_RS25095 Genome accession   NZ_CP085636
Coordinates   5762816..5764081 (+) Length   421 a.a.
NCBI ID   WP_269971857.1    Uniprot ID   -
Organism   Shewanella sp. MTB7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5757816..5769081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWQ47_RS25075 (HWQ47_25100) ampD 5757826..5758416 (-) 591 WP_269971856.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  HWQ47_RS25080 (HWQ47_25105) nadC 5758767..5759657 (+) 891 WP_269968684.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HWQ47_RS25085 (HWQ47_25110) - 5760472..5760945 (+) 474 WP_269968685.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HWQ47_RS25090 (HWQ47_25115) pilB 5761015..5762724 (+) 1710 WP_269968686.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HWQ47_RS25095 (HWQ47_25120) pilC 5762816..5764081 (+) 1266 WP_269971857.1 type II secretion system F family protein Machinery gene
  HWQ47_RS25100 (HWQ47_25125) pilD 5764356..5765267 (+) 912 WP_269968687.1 A24 family peptidase Machinery gene
  HWQ47_RS25105 (HWQ47_25130) coaE 5765303..5765908 (+) 606 WP_269968688.1 dephospho-CoA kinase -
  HWQ47_RS25110 (HWQ47_25135) zapD 5765917..5766651 (+) 735 WP_269968689.1 cell division protein ZapD -
  HWQ47_RS25115 (HWQ47_25140) yacG 5766724..5766936 (+) 213 WP_269968690.1 DNA gyrase inhibitor YacG -
  HWQ47_RS25120 (HWQ47_25145) mutT 5766940..5767344 (+) 405 WP_269968691.1 8-oxo-dGTP diphosphatase MutT -
  HWQ47_RS25125 (HWQ47_25150) - 5767435..5768694 (-) 1260 WP_269968692.1 SO_0444 family Cu/Zn efflux transporter -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45609.02 Da        Isoelectric Point: 10.2027

>NTDB_id=619014 HWQ47_RS25095 WP_269971857.1 5762816..5764081(+) (pilC) [Shewanella sp. MTB7]
MAMATATKKVKSTKKAKAQTKVHTFEWKGLNRNGAKTSGELRGATIAEIKSQLKSQGVSPKSVKKKAPSLFKLGEPKISA
MDIAMMTRQIATMLQAGVPLVTTIEMLGRGHEKVKMRELLGTIVSEIQSGIPLSDALRPHRQYFDDLYVDLVAAGEHSGS
LDQVFERVALYKEKAEALKSKIKKAMFYPAAVVVVAVGVTTLLLLFVVPQFQEIFAGFGAELPAFTQFVIGISEALQASW
YIFAVAIIIAAFLFKRAHLHSQTFRDKVDTLVLKIPIVGPILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNAVY
RNAVIKVRSEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
LVGGLIVAMYLPIFQMGKIVS

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=619014 HWQ47_RS25095 WP_269971857.1 5762816..5764081(+) (pilC) [Shewanella sp. MTB7]
ATAGCCATGGCAACAGCGACTAAAAAAGTTAAATCAACTAAAAAAGCTAAAGCCCAAACTAAAGTTCATACCTTCGAGTG
GAAAGGTCTTAATCGCAATGGAGCAAAAACCTCCGGGGAGTTGCGTGGGGCAACGATTGCTGAGATAAAGAGCCAGCTTA
AATCCCAAGGAGTCTCACCAAAATCAGTCAAGAAAAAAGCTCCCTCGCTTTTTAAGCTAGGCGAACCCAAAATATCAGCC
ATGGATATCGCTATGATGACCCGCCAGATAGCCACCATGCTTCAGGCTGGAGTTCCCTTAGTCACCACCATCGAGATGCT
CGGGCGTGGTCATGAGAAAGTTAAGATGCGCGAACTGCTAGGGACTATTGTTTCTGAGATACAATCAGGTATCCCACTTT
CAGATGCACTGCGCCCACACAGGCAATATTTTGATGACCTCTATGTCGATTTGGTTGCTGCGGGTGAGCATTCCGGTTCG
CTAGATCAGGTTTTTGAGCGAGTAGCCCTCTATAAAGAGAAAGCTGAAGCATTAAAATCTAAAATAAAAAAAGCCATGTT
CTATCCAGCTGCCGTCGTCGTCGTCGCCGTAGGTGTGACTACACTACTACTTCTTTTTGTGGTGCCACAATTTCAGGAAA
TTTTTGCAGGTTTTGGCGCCGAACTGCCCGCATTTACTCAATTTGTCATCGGCATATCTGAAGCCTTACAGGCTTCTTGG
TATATCTTTGCCGTGGCGATTATTATTGCGGCTTTTCTATTTAAACGAGCCCACCTTCACTCGCAGACCTTTAGAGATAA
GGTCGATACGTTAGTTTTAAAAATACCCATTGTTGGTCCTATTCTCCATAAAGCCGCCATGGCCCGTTTTGCGCGCACAC
TCGCGACAACTTTCGCCGCCGGTGTCCCCCTTATCGATGGACTGGAATCTGCAGCTGGAGCCTCCGGCAATGCTGTTTAC
CGTAACGCCGTAATTAAAGTGCGTTCTGAAGTCATGGCAGGAATGCAGATGAACGTTGCCATGAGAACCACAGGTCTCTT
CCCTGACATGCTAATTCAGATGGTGATGATAGGTGAAGAATCTGGTTCACTGGATAATATGCTTAACAAAGTCGCCAACA
TCTACGAGATGCAGGTGGATGATGCCGTTGATGGCCTATCGAGCCTGATAGAACCCATCATGATGGTGGTGATTGGTACA
TTAGTGGGTGGATTGATTGTTGCTATGTACCTGCCGATATTCCAAATGGGTAAGATTGTGAGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.531

96.2

0.553
  pilC Acinetobacter baylyi ADP1

50.739

96.437

0.489
  pilC Acinetobacter baumannii D1279779

51.256

94.537

0.485
  pilC Legionella pneumophila strain ERS1305867

50.126

94.299

0.473
  pilC Vibrio cholerae strain A1552

47.015

95.487

0.449
  pilC Vibrio campbellii strain DS40M4

44.5

95.012

0.423
  pilG Neisseria meningitidis 44/76-A

41.927

91.211

0.382
  pilG Neisseria gonorrhoeae MS11

41.927

91.211

0.382