Detailed information NTG0619015

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HWQ47_RS25100
• Genome accession: NZ_CP085636
• Coordinates: 5764356..5765267 (+)
• Length: 303 a.a.
• NCBI ID: WP_269968687.1
• Uniprot ID: -
• Organism: Shewanella sp. MTB7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5759356..5770267

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWQ47_RS25085 (HWQ47_25110)	-	5760472..5760945 (+)	474	WP_269968685.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
HWQ47_RS25090 (HWQ47_25115)	pilB	5761015..5762724 (+)	1710	WP_269968686.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HWQ47_RS25095 (HWQ47_25120)	pilC	5762816..5764081 (+)	1266	WP_269971857.1	type II secretion system F family protein	Machinery gene
HWQ47_RS25100 (HWQ47_25125)	pilD	5764356..5765267 (+)	912	WP_269968687.1	A24 family peptidase	Machinery gene
HWQ47_RS25105 (HWQ47_25130)	coaE	5765303..5765908 (+)	606	WP_269968688.1	dephospho-CoA kinase	-
HWQ47_RS25110 (HWQ47_25135)	zapD	5765917..5766651 (+)	735	WP_269968689.1	cell division protein ZapD	-
HWQ47_RS25115 (HWQ47_25140)	yacG	5766724..5766936 (+)	213	WP_269968690.1	DNA gyrase inhibitor YacG	-
HWQ47_RS25120 (HWQ47_25145)	mutT	5766940..5767344 (+)	405	WP_269968691.1	8-oxo-dGTP diphosphatase MutT	-
HWQ47_RS25125 (HWQ47_25150)	-	5767435..5768694 (-)	1260	WP_269968692.1	SO_0444 family Cu/Zn efflux transporter	-
HWQ47_RS25130 (HWQ47_25155)	zntR	5768698..5769177 (-)	480	WP_269968693.1	Zn(2+)-responsive transcriptional regulator	-

Sequence

Protein

• Length: 303 a.a.
• Molecular weight: 33572.85 Da
• Isoelectric Point: 7.3446

>NTDB_id=619015 HWQ47_RS25100 WP_269968687.1 5764356..5765267(+) (pilD) [Shewanella sp. MTB7]
MSEFISTMSQNLWLFAIISFVFASVIGSFLNVVIHRLPVMMKREWQQECDQYLNEYHEKLVAPIAKKLAKPIDDYPETYN
LIVPHSSCPKCGSHIKPWHNLPILGWLMLKGKCAQCKSQISARYPVVELFSGLAVAFLALHFGPTLEFALATTLTFGLII
LTGIDLDEMLLPDQITLPLLWLGLIINLNSTFTSPTDAVIGAAAGYLSLWSVFWAFKLLTGKEGMGYGDFKLLAVFGAWL
GWQVLPIIILLSSLVGAVIGIGLMLTKKMNSSNPIPFGPYIAIAGWIAMIWGSSINTWYLSTL

Nucleotide

• Length: 912 bp

>NTDB_id=619015 HWQ47_RS25100 WP_269968687.1 5764356..5765267(+) (pilD) [Shewanella sp. MTB7]
ATGTCGGAATTCATCTCAACCATGAGTCAAAACTTGTGGCTCTTTGCTATTATAAGCTTTGTTTTTGCAAGCGTTATTGG
TAGCTTTCTTAATGTAGTGATCCATCGTTTGCCTGTAATGATGAAGCGAGAGTGGCAACAGGAGTGTGATCAGTATTTGA
ATGAATATCATGAAAAGCTTGTTGCCCCTATCGCCAAAAAGTTAGCTAAACCCATTGACGATTATCCTGAGACATACAAT
TTAATCGTACCACATTCATCCTGTCCTAAATGTGGCAGCCATATTAAGCCTTGGCATAACCTGCCTATTTTAGGTTGGCT
AATGCTCAAAGGTAAATGTGCTCAATGTAAAAGCCAAATATCGGCAAGATATCCCGTTGTAGAGCTATTTTCAGGGCTAG
CGGTTGCTTTTCTCGCACTCCACTTCGGTCCAACGCTTGAGTTTGCACTTGCAACAACATTGACCTTCGGTTTGATCATT
TTAACTGGTATCGACCTCGACGAGATGTTACTTCCCGATCAAATCACTCTACCTCTGCTTTGGCTGGGATTAATCATCAA
CTTGAATAGCACGTTTACCAGTCCAACTGATGCCGTTATTGGGGCTGCGGCCGGCTACTTGAGTCTCTGGAGTGTATTCT
GGGCCTTTAAATTATTAACGGGTAAGGAGGGGATGGGTTATGGTGATTTCAAACTCTTAGCCGTTTTTGGTGCCTGGCTT
GGCTGGCAGGTACTCCCCATCATTATTTTACTCTCTTCATTAGTGGGCGCGGTTATTGGTATAGGATTAATGCTAACTAA
GAAAATGAATTCATCGAATCCCATTCCTTTCGGACCTTATATAGCTATAGCGGGTTGGATTGCCATGATATGGGGCTCCA
GCATCAATACTTGGTACCTTTCAACTCTTTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (154-261)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.342	96.37	0.485
pilD	Vibrio campbellii strain DS40M4	49.658	96.37	0.479
pilD	Acinetobacter baumannii D1279779	48.173	99.34	0.479
pilD	Acinetobacter nosocomialis M2	48.173	99.34	0.479
pilD	Neisseria gonorrhoeae MS11	44.326	93.069	0.413