Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LCH97_RS10330 Genome accession   NZ_CP085530
Coordinates   2174582..2175673 (+) Length   363 a.a.
NCBI ID   WP_227301643.1    Uniprot ID   -
Organism   Vogesella sp. XCS3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2169582..2180673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH97_RS10305 (LCH97_10305) rsmB 2169626..2170876 (-) 1251 WP_227301638.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  LCH97_RS10310 (LCH97_10310) htpX 2170962..2171822 (-) 861 WP_227301639.1 zinc metalloprotease HtpX -
  LCH97_RS10315 (LCH97_10315) fmt 2171877..2172797 (-) 921 WP_227301640.1 methionyl-tRNA formyltransferase -
  LCH97_RS10320 (LCH97_10320) def 2172961..2173464 (-) 504 WP_227301641.1 peptide deformylase -
  LCH97_RS10325 (LCH97_10325) - 2173572..2174585 (+) 1014 WP_227301642.1 LysM peptidoglycan-binding domain-containing protein -
  LCH97_RS10330 (LCH97_10330) dprA 2174582..2175673 (+) 1092 WP_227301643.1 DNA-processing protein DprA Machinery gene
  LCH97_RS10335 (LCH97_10335) - 2175704..2176162 (+) 459 WP_227301644.1 DUF494 family protein -
  LCH97_RS10340 (LCH97_10340) topA 2176297..2178591 (+) 2295 WP_227301645.1 type I DNA topoisomerase -
  LCH97_RS10345 (LCH97_10345) - 2178871..2179245 (+) 375 WP_227301646.1 hypothetical protein -
  LCH97_RS10350 (LCH97_10350) - 2179317..2179700 (-) 384 WP_227301647.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 37781.96 Da        Isoelectric Point: 5.1707

>NTDB_id=618861 LCH97_RS10330 WP_227301643.1 2174582..2175673(+) (dprA) [Vogesella sp. XCS3]
MSYNLQDWATLALSPGIGPQRFLQLLQRFGSATAALAASRSQLAGLLEGDALDALGGDIARQSAADALAWAQQPGCSLLT
LNDADYPCQLAEAGAAPPLLFARGQRALLATPMLAIVGSRNATPQGEDNARTFAKRLAAQGYTIVSGLAGGIDAAAHEGA
LAAGGGTIAIIGTGIDRVYPASNRKLAHQIAEQGLILSEFALGMGPLAQHFPRRNRIIAGLCRGCLVVEATLQSGSLITA
RLSLEAGREVMAIPGSILNPQARGCHRLIKDGARLVETVDDVLDEIGKPSLPPPDTTAEAEQGTTQGSDILHAMGYDPVD
ADTLASRLGLTAGDVYAMLLELELLGHVDSMQGGRYQRRADAH

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=618861 LCH97_RS10330 WP_227301643.1 2174582..2175673(+) (dprA) [Vogesella sp. XCS3]
ATGAGCTATAACTTGCAAGACTGGGCCACGCTGGCGCTATCCCCCGGCATCGGCCCGCAGCGCTTTTTGCAGCTACTGCA
GCGCTTTGGCAGCGCCACCGCCGCACTGGCTGCCAGTCGCAGCCAGCTGGCAGGCCTGCTGGAAGGCGATGCACTGGACG
CGCTGGGCGGCGACATCGCCCGCCAGAGCGCTGCCGATGCCCTGGCCTGGGCACAGCAGCCCGGCTGCAGCCTGCTCACC
CTGAACGACGCCGACTACCCCTGCCAGCTGGCCGAAGCCGGCGCCGCCCCGCCACTGCTGTTTGCCCGCGGCCAACGTGC
ACTGCTCGCCACGCCCATGCTGGCCATCGTCGGCAGCCGCAATGCCACCCCGCAGGGCGAAGATAACGCACGCACCTTTG
CCAAAAGGTTGGCCGCACAGGGCTACACCATCGTCAGCGGCCTGGCCGGTGGCATCGACGCGGCCGCCCACGAAGGCGCG
CTGGCGGCCGGTGGAGGCACCATCGCCATCATCGGCACCGGCATAGACCGCGTTTACCCGGCCAGCAACCGCAAGCTGGC
GCACCAGATCGCCGAGCAAGGCCTGATCTTGTCCGAGTTCGCACTGGGTATGGGCCCGCTGGCGCAACACTTTCCACGCC
GTAACCGCATCATTGCCGGCCTGTGCCGTGGTTGTTTGGTGGTAGAAGCCACACTACAAAGTGGCTCGCTGATTACCGCC
CGCCTGTCGCTGGAAGCCGGGCGTGAAGTGATGGCCATACCGGGCTCCATCCTGAACCCGCAAGCACGCGGCTGCCACCG
CCTGATCAAGGACGGCGCACGGCTGGTAGAAACGGTAGACGACGTTCTGGACGAAATCGGCAAACCGTCGCTGCCACCAC
CCGACACCACGGCCGAGGCAGAACAAGGCACCACCCAAGGCAGCGATATTCTGCATGCCATGGGCTACGACCCGGTAGAC
GCCGACACTCTGGCTAGCCGGCTCGGGTTGACGGCAGGGGACGTTTACGCGATGCTTCTTGAGCTCGAACTACTGGGCCA
TGTCGACAGCATGCAAGGCGGGCGCTACCAGCGCCGTGCCGACGCCCACTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(297-354)

DNA recombination-mediator protein A (DNA_processg_A)

(71-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

50.518

100

0.537
  dprA Neisseria meningitidis MC58

50.518

100

0.537
  dprA Neisseria gonorrhoeae MS11

49.479

100

0.523
  dprA Neisseria gonorrhoeae strain FA1090

49.479

100

0.523
  dprA Vibrio campbellii strain DS40M4

42.74

100

0.43
  dprA Legionella pneumophila strain ERS1305867

40.849

100

0.424
  dprA Vibrio cholerae strain A1552

39.678

100

0.408
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.946

100

0.405
  dprA Thermus thermophilus HB27

37.5

100

0.38
  dprA Acinetobacter baylyi ADP1

38.873

97.796

0.38
  dprA Glaesserella parasuis strain SC1401

43.974

84.573

0.372