Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SIR_RS11290 Genome accession   NC_022246
Coordinates   300668..301138 (+) Length   156 a.a.
NCBI ID   WP_003074535.1    Uniprot ID   A0AAE8KBG2
Organism   Streptococcus intermedius B196     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 295668..306138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS11255 (SIR_0298) - 295776..296585 (+) 810 WP_021002437.1 CDP-diacylglycerol diphosphatase -
  SIR_RS11260 (SIR_0299) - 296575..297090 (+) 516 WP_009567964.1 thioredoxin domain-containing protein -
  SIR_RS20130 (SIR_0300) - 297268..297501 (+) 234 Protein_284 hydrolase -
  SIR_RS20135 - 297544..297660 (+) 117 Protein_285 hydrolase -
  SIR_RS11270 (SIR_0301) - 297741..298169 (-) 429 WP_021002439.1 hypothetical protein -
  SIR_RS11275 (SIR_0302) - 298144..299049 (-) 906 WP_003074538.1 phosphodiester glycosidase family protein -
  SIR_RS11280 (SIR_0303) - 299046..300089 (-) 1044 WP_021002440.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  SIR_RS11285 (SIR_0304) rpsF 300366..300656 (+) 291 WP_003074536.1 30S ribosomal protein S6 -
  SIR_RS11290 (SIR_0305) ssbA 300668..301138 (+) 471 WP_003074535.1 single-stranded DNA-binding protein Machinery gene
  SIR_RS11295 (SIR_0306) rpsR 301175..301414 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  SIR_RS11300 (SIR_0307) - 301823..302332 (+) 510 WP_021002441.1 GNAT family N-acetyltransferase -
  SIR_RS11305 (SIR_0308) - 302484..303161 (-) 678 WP_003074532.1 DUF1129 domain-containing protein -
  SIR_RS11310 (SIR_0309) - 303177..304121 (-) 945 WP_003070861.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17465.18 Da        Isoelectric Point: 4.9008

>NTDB_id=61866 SIR_RS11290 WP_003074535.1 300668..301138(+) (ssbA) [Streptococcus intermedius B196]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRASREGQSSGGYTSNNFGSSPSANQVPNFSRDENPFGNTNPMDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=61866 SIR_RS11290 WP_003074535.1 300668..301138(+) (ssbA) [Streptococcus intermedius B196]
ATGATAAATAACGTTGTACTTGTGGGTCGGATGACCCGAGATGCCGAACTTCGCTATACGCCGCAAAATCAAGCGGTCGC
AACTTTTACTCTTGCTGTTAATCGCAACTTTAAAAATCAAAGTGGCGAGAGAGAAGCAGATTTTATTAACGTTGTAATTT
GGCGCCAACAGGCAGAAAATCTTGCAAATTGGGCTAAAAAAGGAGCTCTTATCGGAGTTACTGGTCGCATTCAGACACGT
AACTACGAAAATCAGCAAGGTCAACGTGTCTATGTGACAGAAGTCGTAGCGGATAATTTCCAGTTATTGGAAAGTCGCGC
TAGTCGTGAAGGTCAATCTTCTGGCGGCTATACTTCTAACAATTTTGGAAGTTCACCTTCTGCCAACCAAGTACCCAACT
TTTCTCGTGATGAAAATCCATTTGGGAATACCAATCCAATGGACATCTCAGATGACGATCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.195

100

0.66
  ssb Latilactobacillus sakei subsp. sakei 23K

56.571

100

0.635
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

67.949

0.391
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

69.872

0.385
  ssbB/cilA Streptococcus pneumoniae TIGR4

54.128

69.872

0.378
  ssbB/cilA Streptococcus mitis SK321

53.211

69.872

0.372
  ssbB/cilA Streptococcus mitis NCTC 12261

53.211

69.872

0.372
  ssbB/cilA Streptococcus pneumoniae Rx1

53.211

69.872

0.372
  ssbB/cilA Streptococcus pneumoniae D39

53.211

69.872

0.372
  ssbB/cilA Streptococcus pneumoniae R6

53.211

69.872

0.372

Multiple sequence alignment