Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LIT24_RS18690 Genome accession   NZ_CP085406
Coordinates   3657923..3659161 (-) Length   412 a.a.
NCBI ID   WP_098938495.1    Uniprot ID   -
Organism   Bacillus bombysepticus strain F12     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3652923..3664161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT24_RS18670 (LIT24_18670) spoVS 3653335..3653595 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  LIT24_RS18675 (LIT24_18675) - 3653745..3654539 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  LIT24_RS18680 (LIT24_18680) rny 3654702..3656267 (-) 1566 WP_000099770.1 ribonuclease Y -
  LIT24_RS18685 (LIT24_18685) recA 3656748..3657779 (-) 1032 WP_001283860.1 recombinase RecA Machinery gene
  LIT24_RS18690 (LIT24_18690) cinA 3657923..3659161 (-) 1239 WP_098938495.1 competence/damage-inducible protein A Machinery gene
  LIT24_RS18695 (LIT24_18695) pgsA 3659182..3659760 (-) 579 WP_001052970.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIT24_RS18700 (LIT24_18700) - 3659825..3660736 (-) 912 WP_000137476.1 RodZ domain-containing protein -
  LIT24_RS18705 (LIT24_18705) - 3660758..3661543 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  LIT24_RS18710 (LIT24_18710) - 3661682..3661930 (-) 249 WP_000114450.1 DUF3243 domain-containing protein -
  LIT24_RS18715 (LIT24_18715) - 3662006..3662719 (-) 714 WP_000759606.1 SDR family oxidoreductase -
  LIT24_RS18720 (LIT24_18720) - 3662820..3664106 (-) 1287 WP_252209681.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45494.81 Da        Isoelectric Point: 5.2280

>NTDB_id=617825 LIT24_RS18690 WP_098938495.1 3657923..3659161(-) (cinA) [Bacillus bombysepticus strain F12]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IAASLDEELVYDEKALALISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHDDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDVLKADIGISFTGVAGPDASEQKEPGTVFVGLSIKEEPTVVFPLNLSGSRQQIRERTAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=617825 LIT24_RS18690 WP_098938495.1 3657923..3659161(-) (cinA) [Bacillus bombysepticus strain F12]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTATCATACTGTTGTTGGTGATAATAATAAGCGATTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATACTTATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACG
ATAGCTGCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAGCCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCTGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGTTTCTTCGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTGCAAGATTTAATTGATGGACAAACAAACCCAACAATCGCCCCGTTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAATTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAACGCTGGTG
TTTCTTCTGTGTTTAAAGGCGGTGTCATTTGTTATCATGATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTG
TTGCATACTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATGTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAGCAGAAAGAACCAGGAACAGTATTTGTTGGGCTTTCGA
TTAAGGAAGAACCAACTGTAGTCTTTCCTCTTAATTTAAGCGGAAGTCGTCAACAAATTAGAGAACGAACAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.252

100

0.583
  cinA Streptococcus mitis SK321

46.778

100

0.476
  cinA Streptococcus pneumoniae TIGR4

46.539

100

0.473
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus pneumoniae Rx1

46.062

100

0.468
  cinA Streptococcus pneumoniae R6

46.062

100

0.468
  cinA Streptococcus pneumoniae D39

45.823

100

0.466
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

40.318

91.505

0.369