Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LIT24_RS18685 Genome accession   NZ_CP085406
Coordinates   3656748..3657779 (-) Length   343 a.a.
NCBI ID   WP_001283860.1    Uniprot ID   A0A9W5QDV4
Organism   Bacillus bombysepticus strain F12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3651748..3662779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT24_RS18665 (LIT24_18665) - 3652353..3653276 (-) 924 WP_025966586.1 dipeptidase -
  LIT24_RS18670 (LIT24_18670) spoVS 3653335..3653595 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  LIT24_RS18675 (LIT24_18675) - 3653745..3654539 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  LIT24_RS18680 (LIT24_18680) rny 3654702..3656267 (-) 1566 WP_000099770.1 ribonuclease Y -
  LIT24_RS18685 (LIT24_18685) recA 3656748..3657779 (-) 1032 WP_001283860.1 recombinase RecA Machinery gene
  LIT24_RS18690 (LIT24_18690) cinA 3657923..3659161 (-) 1239 WP_098938495.1 competence/damage-inducible protein A Machinery gene
  LIT24_RS18695 (LIT24_18695) pgsA 3659182..3659760 (-) 579 WP_001052970.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIT24_RS18700 (LIT24_18700) - 3659825..3660736 (-) 912 WP_000137476.1 RodZ domain-containing protein -
  LIT24_RS18705 (LIT24_18705) - 3660758..3661543 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  LIT24_RS18710 (LIT24_18710) - 3661682..3661930 (-) 249 WP_000114450.1 DUF3243 domain-containing protein -
  LIT24_RS18715 (LIT24_18715) - 3662006..3662719 (-) 714 WP_000759606.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37241.22 Da        Isoelectric Point: 4.9868

>NTDB_id=617824 LIT24_RS18685 WP_001283860.1 3656748..3657779(-) (recA) [Bacillus bombysepticus strain F12]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERRVSTVSSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFF
IREHHGISEDSGAEGAEDSTLLD

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=617824 LIT24_RS18685 WP_001283860.1 3656748..3657779(-) (recA) [Bacillus bombysepticus strain F12]
ATGAGTGATCGTCAAGCAGCGTTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGAGAACAAGCGGAGCGTAGAGTTTCTACGGTTTCTAGTGGTTCTTTAGCACTTGATGTGGCACTAGGAGTAGGCGGAT
ATCCACGTGGCCGTATTATCGAAATTTACGGACCTGAAAGTTCAGGTAAAACGACAGTTTCATTACATGCAATTGCAGAA
GTACAACGTCAAGGTGGACAAGCAGCATTCATTGATGCGGAGCACGCAATGGATCCTGTATATGCACAAAAATTAGGCGT
TAACATAGATGAATTACTATTATCACAGCCTGATACAGGGGAGCAAGGATTGGAAATCGCGGAAGCACTTGTACGAAGTG
GTGCGGTTGACATTATCGTAATTGACTCTGTAGCAGCTCTTGTACCGAAAGCAGAGATTGAAGGCGATATGGGTGACTCA
CACGTAGGTTTACAAGCACGTTTAATGTCACAAGCACTTCGTAAGCTTTCAGGAGCAATTAACAAATCAAAAACAATTGC
AATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGAAACCCAGAAACAACTCCAGGTGGTCGTGCGTTGA
AATTCTATTCAACTGTCCGTCTTGAAGTGCGTCGTGCGGAGCAATTAAAGCAAGGTAACGACATCGTTGGTAATAAAACA
AAAGTAAAAGTAGTGAAAAATAAAGTAGCACCACCATTCCGTGTTGCGGAAGTTGATATTATGTACGGAGAAGGTATTTC
AAGAGAAGGTGAAATCTTGGATATGGCTTCTGAGCTTGATATCGTTCAAAAGAGCGGTGCTTGGTATTCTTATAATGAAG
AACGCCTAGGACAAGGTCGTGAAAATTCGAAGCAGTTCTTAAAAGAAAATACAGATTTAAGAGAAGAAATTGCCTTCTTT
ATTCGTGAGCATCACGGAATTAGTGAAGATTCTGGTGCTGAGGGCGCAGAAGATTCAACTCTTCTTGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.273

96.21

0.84
  recA Latilactobacillus sakei subsp. sakei 23K

76.758

95.335

0.732
  recA Streptococcus mitis SK321

68.529

99.125

0.679
  recA Streptococcus mutans UA159

67.449

99.417

0.671
  recA Streptococcus pyogenes NZ131

70.122

95.627

0.671
  recA Streptococcus pneumoniae Rx1

69.394

96.21

0.668
  recA Streptococcus pneumoniae R6

69.394

96.21

0.668
  recA Streptococcus pneumoniae TIGR4

69.394

96.21

0.668
  recA Streptococcus pneumoniae D39

69.394

96.21

0.668
  recA Streptococcus mitis NCTC 12261

69.394

96.21

0.668
  recA Lactococcus lactis subsp. cremoris KW2

67.665

97.376

0.659
  recA Neisseria gonorrhoeae strain FA1090

64.307

98.834

0.636
  recA Neisseria gonorrhoeae MS11

64.307

98.834

0.636
  recA Neisseria gonorrhoeae MS11

64.307

98.834

0.636
  recA Ralstonia pseudosolanacearum GMI1000

68.153

91.545

0.624
  recA Acinetobacter baumannii D1279779

62.202

97.959

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.804

95.044

0.606
  recA Acinetobacter baylyi ADP1

61.243

98.542

0.604
  recA Helicobacter pylori 26695

62.31

95.918

0.598
  recA Helicobacter pylori strain NCTC11637

62.31

95.918

0.598
  recA Glaesserella parasuis strain SC1401

63.95

93.003

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

95.335

0.595
  recA Vibrio cholerae strain A1552

63.551

93.586

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.551

93.586

0.595
  recA Pseudomonas stutzeri DSM 10701

61.875

93.294

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.392

92.128

0.566