Detailed information NTG0617823

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: LIT24_RS13515
• Genome accession: NZ_CP085406
• Coordinates: 2642598..2643179 (-)
• Length: 193 a.a.
• NCBI ID: WP_000991610.1
• Uniprot ID: A0A9W5QF48
• Organism: Bacillus bombysepticus strain F12
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2637598..2648179

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LIT24_RS13485 (LIT24_13485)	-	2638221..2638721 (-)	501	WP_170317880.1	HIT family protein	-
LIT24_RS13490 (LIT24_13490)	-	2638813..2638980 (-)	168	WP_000508470.1	hypothetical protein	-
LIT24_RS13495 (LIT24_13495)	-	2639198..2639434 (+)	237	WP_000283222.1	hypothetical protein	-
LIT24_RS13500 (LIT24_13500)	-	2639488..2640324 (-)	837	WP_098537216.1	proline/glycine betaine ABC transporter permease	-
LIT24_RS13505 (LIT24_13505)	-	2640317..2641522 (-)	1206	WP_000370606.1	glycine betaine/L-proline ABC transporter ATP-binding protein	-
LIT24_RS13510 (LIT24_13510)	-	2641694..2642551 (+)	858	WP_001227622.1	glycine betaine ABC transporter substrate-binding protein	-
LIT24_RS13515 (LIT24_13515)	clpP	2642598..2643179 (-)	582	WP_000991610.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
LIT24_RS13520 (LIT24_13520)	-	2643201..2643887 (-)	687	WP_100618873.1	RNA polymerase subunit sigma-70	-
LIT24_RS13525 (LIT24_13525)	-	2644030..2644350 (+)	321	WP_001125388.1	2Fe-2S iron-sulfur cluster-binding protein	-
LIT24_RS13530 (LIT24_13530)	rpiA	2644355..2645017 (+)	663	WP_065845370.1	ribose 5-phosphate isomerase A	-
LIT24_RS13535 (LIT24_13535)	-	2645132..2645566 (+)	435	WP_070184077.1	GNAT family N-acetyltransferase	-
LIT24_RS13540 (LIT24_13540)	-	2645693..2647060 (-)	1368	WP_001065162.1	lytic polysaccharide monooxygenase	-

Sequence

Protein

• Length: 193 a.a.
• Molecular weight: 21192.45 Da
• Isoelectric Point: 5.0776

>NTDB_id=617823 LIT24_RS13515 WP_000991610.1 2642598..2643179(-) (clpP) [Bacillus bombysepticus strain F12]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVTKK

Nucleotide

• Length: 582 bp

>NTDB_id=617823 LIT24_RS13515 WP_000991610.1 2642598..2643179(-) (clpP) [Bacillus bombysepticus strain F12]
ATGAATGCAATTCCATATGTAGTAGAACAAACAAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTGAAAGA
CCGCATTATTATTATCGGCTCAGAAATTAATGATCAAGTAGCGAGTAGTGTCGTAGCGCAATTATTATTTTTAGAAGCAG
AAGATGCAGAAAAAGATATATTCTTATACATCAATAGCCCTGGCGGTTCAACGACAGCAGGTTTTGCAATATTAGATACG
ATGAATTTAATTAAACCAGATGTGCAAACGCTATGCATGGGCTTTGCGGCATCATTCGGTGCATTGTTATTATTATCAGG
AGCAAAAGGAAAACGGTTTGCGCTCCCTAACAGTGAAATTATGATTCATCAGCCGCTTGGTGGTGCACAAGGGCAAGCAA
CAGAAATTGAAATAACTGCGAAAAGAATATTAAAGTTAAAGCATGATATTAATAAAATGATTGCAGAAAAAACAGGCCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGCATATGGGATTGTAGA
TGACGTTGTTACGAAAAAATAA

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (14-192)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	68.586	98.964	0.679
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	67.196	97.927	0.658
clpP	Streptococcus pyogenes JRS4	56.085	97.927	0.549
clpP	Streptococcus pyogenes MGAS315	56.085	97.927	0.549
clpP	Streptococcus pneumoniae R6	55.208	99.482	0.549
clpP	Streptococcus pneumoniae TIGR4	55.208	99.482	0.549
clpP	Streptococcus pneumoniae Rx1	55.208	99.482	0.549
clpP	Streptococcus thermophilus LMG 18311	55.208	99.482	0.549
clpP	Streptococcus thermophilus LMD-9	55.208	99.482	0.549
clpP	Streptococcus pneumoniae D39	55.208	99.482	0.549
clpP	Streptococcus mutans UA159	53.968	97.927	0.528
clpP	Lactococcus lactis subsp. cremoris KW2	52.381	97.927	0.513
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	50.265	97.927	0.492