Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LIT24_RS18920 Genome accession   NZ_CP085406
Coordinates   3709198..3709977 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus bombysepticus strain F12     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3704198..3714977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT24_RS18895 (LIT24_18895) uppS 3704946..3705722 (-) 777 WP_000971296.1 isoprenyl transferase -
  LIT24_RS18900 (LIT24_18900) frr 3705808..3706365 (-) 558 WP_000531501.1 ribosome recycling factor -
  LIT24_RS18905 (LIT24_18905) pyrH 3706368..3707090 (-) 723 WP_000042668.1 UMP kinase -
  LIT24_RS18910 (LIT24_18910) tsf 3707157..3708044 (-) 888 WP_001018578.1 translation elongation factor Ts -
  LIT24_RS18915 (LIT24_18915) rpsB 3708148..3708849 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  LIT24_RS18920 (LIT24_18920) codY 3709198..3709977 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LIT24_RS18925 (LIT24_18925) hslU 3710055..3711446 (-) 1392 WP_000550087.1 ATP-dependent protease ATPase subunit HslU -
  LIT24_RS18930 (LIT24_18930) hslV 3711469..3712011 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  LIT24_RS18935 (LIT24_18935) xerC 3712054..3712953 (-) 900 WP_044584806.1 tyrosine recombinase XerC -
  LIT24_RS18940 (LIT24_18940) trmFO 3713019..3714323 (-) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=617826 LIT24_RS18920 WP_000421290.1 3709198..3709977(-) (codY) [Bacillus bombysepticus strain F12]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=617826 LIT24_RS18920 WP_000421290.1 3709198..3709977(-) (codY) [Bacillus bombysepticus strain F12]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCGAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459