Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA/cilB/dalA   Type   Machinery gene
Locus tag   SAIN_RS04930 Genome accession   NC_022244
Coordinates   1004580..1005422 (-) Length   280 a.a.
NCBI ID   WP_021001698.1    Uniprot ID   -
Organism   Streptococcus anginosus C1051     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 999580..1010422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAIN_RS04910 (SAIN_0955) trmFO 999800..1001134 (-) 1335 WP_021001695.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  SAIN_RS04915 (SAIN_0956) - 1001308..1001805 (-) 498 WP_021001696.1 hypothetical protein -
  SAIN_RS09630 - 1001869..1002066 (-) 198 WP_412093812.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  SAIN_RS04920 - 1002069..1002599 (+) 531 Protein_939 DNA topoisomerase -
  SAIN_RS04925 (SAIN_0957) topA 1002593..1004494 (-) 1902 Protein_940 type I DNA topoisomerase -
  SAIN_RS04930 (SAIN_0958) dprA/cilB/dalA 1004580..1005422 (-) 843 WP_021001698.1 DNA-processing protein DprA Machinery gene
  SAIN_RS04935 (SAIN_0959) - 1005506..1006063 (-) 558 WP_021001699.1 sugar O-acetyltransferase -
  SAIN_RS04940 (SAIN_0960) - 1006053..1006880 (-) 828 WP_021001700.1 PRD domain-containing protein -
  SAIN_RS04945 (SAIN_0961) - 1006877..1007659 (-) 783 WP_003024460.1 ribonuclease HII -
  SAIN_RS04950 (SAIN_0962) ylqF 1007646..1008497 (-) 852 WP_003024457.1 ribosome biogenesis GTPase YlqF -
  SAIN_RS04955 (SAIN_0963) - 1008617..1009534 (-) 918 WP_003024454.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31131.64 Da        Isoelectric Point: 5.2196

>NTDB_id=61770 SAIN_RS04930 WP_021001698.1 1004580..1005422(-) (dprA/cilB/dalA) [Streptococcus anginosus C1051]
MDNFDIYKLKEAGLTNQQVINVLSYAEIQEKELSVKDMAVVSECRNPALFIEKYLQLDDDLLRQEFEKFSSFSILDDVYP
WDLSEIYNPPVLLFYKGNLDLLKLPKVAVVGSRNSSRVGSQSVQKIIKELNNELVIVSGLARGIDTSAHMAALQNGGRTI
AVIGTGLDVFYPRANKKLQSYLGEHHLVLSEYGSEAEPLKFHFPERNRIIAGLCRGVIVAEAKMRSGSLITCERAMEEGR
DVFAILGSILDGRSDGCHHLIQEGAKCVTSGADVLSEFQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=61770 SAIN_RS04930 WP_021001698.1 1004580..1005422(-) (dprA/cilB/dalA) [Streptococcus anginosus C1051]
ATGGATAATTTTGATATTTATAAATTAAAAGAAGCTGGCTTGACTAATCAGCAGGTCATCAATGTTCTCTCGTATGCTGA
GATACAAGAAAAAGAATTATCGGTAAAAGATATGGCAGTTGTTTCGGAATGCCGCAATCCTGCTCTTTTCATTGAAAAAT
ATCTGCAGCTAGATGATGATTTATTACGTCAAGAATTTGAAAAGTTCTCATCCTTTTCTATCTTGGATGATGTGTATCCT
TGGGATTTGAGCGAAATTTACAATCCGCCCGTTCTTCTTTTTTATAAAGGTAATTTGGATTTGCTAAAATTACCTAAAGT
AGCTGTTGTAGGAAGTCGGAATAGTAGCCGAGTAGGCAGTCAATCCGTTCAAAAGATTATTAAAGAGCTAAACAATGAAT
TGGTTATCGTGAGTGGTTTAGCACGCGGAATTGATACCTCGGCTCACATGGCAGCATTGCAAAATGGTGGTCGAACAATT
GCAGTTATCGGAACGGGTCTAGACGTTTTTTATCCAAGGGCGAATAAAAAACTCCAATCGTATTTGGGAGAACATCATCT
AGTACTTAGTGAATATGGTTCTGAAGCAGAGCCATTAAAATTTCATTTTCCAGAGCGTAATCGGATTATAGCAGGATTGT
GCAGAGGGGTTATTGTTGCTGAAGCCAAAATGCGCTCAGGCAGTTTAATTACTTGTGAGCGCGCGATGGAAGAAGGACGA
GATGTGTTTGCTATTCTAGGGTCAATTTTAGACGGCAGAAGTGATGGCTGTCATCATTTGATTCAAGAGGGTGCAAAGTG
TGTCACATCAGGCGCTGACGTACTTTCTGAATTCCAATTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

76.071

100

0.761
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

75.714

100

0.757
  dprA/cilB/dalA Streptococcus pneumoniae D39

75.714

100

0.757
  dprA/cilB/dalA Streptococcus pneumoniae R6

75.714

100

0.757
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

75.714

100

0.757
  dprA/cilB/dalA Streptococcus mitis SK321

75.357

100

0.754
  dprA Streptococcus mutans UA159

64.643

100

0.646
  dprA Lactococcus lactis subsp. cremoris KW2

57.5

100

0.575
  dprA Staphylococcus aureus N315

37.589

100

0.379
  dprA Legionella pneumophila strain ERS1305867

43.983

86.071

0.379
  dprA Staphylococcus aureus MW2

37.367

100

0.375
  dprA Bacillus subtilis subsp. subtilis str. 168

44.493

81.071

0.361

Multiple sequence alignment