Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LG323_RS05440 Genome accession   NZ_CP085242
Coordinates   1143184..1144404 (+) Length   406 a.a.
NCBI ID   WP_404419731.1    Uniprot ID   -
Organism   Marinospirillum sp. strain ABH-597     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1138184..1149404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG323_RS05420 (LG323_05430) - 1138553..1139647 (+) 1095 WP_404419723.1 3-deoxy-7-phosphoheptulonate synthase -
  LG323_RS05425 (LG323_05435) - 1139737..1140423 (-) 687 WP_404419725.1 DUF5610 domain-containing protein -
  LG323_RS05430 (LG323_05440) - 1140695..1141090 (-) 396 WP_404419727.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LG323_RS05435 (LG323_05450) pilB 1141457..1143172 (+) 1716 WP_404419729.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LG323_RS05440 (LG323_05455) pilC 1143184..1144404 (+) 1221 WP_404419731.1 type II secretion system F family protein Machinery gene
  LG323_RS05445 (LG323_05460) - 1144404..1145276 (+) 873 WP_404419733.1 prepilin peptidase -
  LG323_RS05450 (LG323_05465) - 1145266..1146588 (-) 1323 WP_404419734.1 replication-associated recombination protein A -
  LG323_RS05455 (LG323_05470) lolA 1146590..1147210 (-) 621 WP_404419736.1 outer membrane lipoprotein chaperone LolA -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 45167.38 Da        Isoelectric Point: 10.2399

>NTDB_id=616300 LG323_RS05440 WP_404419731.1 1143184..1144404(+) (pilC) [Marinospirillum sp. strain ABH-597]
MAATKPPKIHLFHWEGTNARREKIKGEIEAEDINLVRAKLREQGISPKRIRKKSNFSLGLGEKITARDITLFSRQLATMI
KAGVPVVQALTITIEGQTKKKMRNLLMDLRDQVSAGTPVAQALRRHPKVFDDLFCSLVEAGEASGALEDMLERVALYKER
MESLKNKIKKALYYPVFVLIIGMGVSALLLVKVVPEFEKMFAGFGAELPAFTQMVVNLSRFMQEWWWLVFGTLIGLVYLV
NFMKKRSEAFAYRLSKFTLRLPIVGQLLHKSAVARFSRTLATSFSAGVPLVDALDSAGSSTGNLVYRGAVTRMKDDVATG
QQLNFSMRQARLFPTMVNQMVAIGEESGALDTMLMKVADFFEEEVNTMVDSMTSLLEPLVIAVLGVIVGGLVIAMYLPIF
QMGSIM

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=616300 LG323_RS05440 WP_404419731.1 1143184..1144404(+) (pilC) [Marinospirillum sp. strain ABH-597]
ATGGCAGCAACCAAACCACCCAAGATCCATTTATTCCACTGGGAAGGAACCAATGCCCGGCGCGAAAAGATCAAGGGCGA
AATTGAAGCCGAAGACATCAATCTGGTGCGTGCCAAGCTTCGTGAGCAGGGCATTTCACCCAAGCGGATTCGCAAAAAGT
CCAATTTCTCCCTGGGTCTGGGTGAGAAAATCACGGCCCGTGATATCACTCTTTTTTCGCGCCAGCTGGCAACGATGATC
AAGGCTGGTGTTCCGGTGGTTCAGGCTTTGACCATCACCATTGAAGGCCAGACCAAAAAGAAAATGCGTAACCTCTTGAT
GGATCTGCGTGATCAGGTTTCGGCAGGCACACCAGTGGCTCAGGCCTTGCGTCGTCATCCCAAGGTTTTTGATGATCTGT
TTTGCAGCCTTGTGGAAGCCGGTGAAGCCTCGGGGGCCCTGGAAGACATGCTGGAACGGGTGGCTCTGTACAAGGAGCGC
ATGGAGTCGCTGAAAAACAAAATCAAAAAAGCGCTGTATTACCCGGTTTTTGTTCTGATCATTGGCATGGGGGTATCGGC
TCTGCTGCTGGTCAAGGTGGTTCCGGAATTTGAAAAAATGTTTGCCGGTTTTGGGGCAGAGCTGCCGGCTTTCACCCAGA
TGGTGGTCAATCTTTCGCGGTTCATGCAGGAATGGTGGTGGCTGGTGTTCGGGACCTTGATCGGCTTGGTTTATCTGGTG
AATTTCATGAAAAAACGCTCGGAAGCTTTTGCTTACCGACTCAGTAAATTCACTTTGCGTTTGCCCATTGTCGGCCAGCT
TCTGCACAAATCGGCGGTCGCCCGTTTTTCACGCACCCTAGCAACCTCCTTCTCGGCAGGGGTGCCCTTGGTTGATGCTC
TGGATTCGGCAGGCAGTTCAACCGGCAACCTGGTTTATCGTGGGGCGGTTACCCGGATGAAGGATGATGTTGCCACCGGC
CAGCAGCTGAATTTTTCCATGCGCCAGGCCAGACTCTTTCCCACCATGGTGAACCAGATGGTGGCCATCGGTGAAGAGTC
CGGTGCACTGGATACCATGCTAATGAAGGTGGCTGATTTCTTCGAGGAAGAGGTCAACACCATGGTGGATAGCATGACCA
GCCTGCTGGAGCCCCTGGTGATTGCGGTATTGGGTGTTATTGTCGGTGGCCTGGTGATTGCCATGTACCTGCCCATTTTC
CAGATGGGAAGCATCATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.208

99.507

0.539
  pilC Acinetobacter baylyi ADP1

52.785

100

0.537
  pilC Acinetobacter baumannii D1279779

53.186

100

0.534
  pilC Legionella pneumophila strain ERS1305867

49.373

98.276

0.485
  pilC Vibrio campbellii strain DS40M4

44.554

99.507

0.443
  pilC Vibrio cholerae strain A1552

42.752

100

0.429
  pilG Neisseria gonorrhoeae MS11

41.162

97.537

0.401
  pilG Neisseria meningitidis 44/76-A

41.162

97.537

0.401
  pilC Thermus thermophilus HB27

37.799

100

0.389