Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   M6G09_RS11405 Genome accession   NZ_CP102359
Coordinates   2671054..2671659 (-) Length   201 a.a.
NCBI ID   WP_031040345.1    Uniprot ID   A0ABS7WEV1
Organism   Streptomyces sp. B146     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2666054..2676659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M6G09_RS11390 (M6G09_11420) - 2667736..2668707 (+) 972 WP_224300576.1 hypothetical protein -
  M6G09_RS11395 (M6G09_11425) clpX 2668812..2670098 (-) 1287 WP_031040350.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  M6G09_RS11400 (M6G09_11430) clpP 2670290..2671003 (-) 714 WP_031040348.1 ATP-dependent Clp protease proteolytic subunit Regulator
  M6G09_RS11405 (M6G09_11435) clpP 2671054..2671659 (-) 606 WP_031040345.1 ATP-dependent Clp protease proteolytic subunit Regulator
  M6G09_RS11410 (M6G09_11440) tig 2672029..2673456 (-) 1428 WP_195888290.1 trigger factor -
  M6G09_RS11425 (M6G09_11455) - 2674436..2674630 (-) 195 WP_031040337.1 hypothetical protein -
  M6G09_RS11430 (M6G09_11460) - 2675354..2676595 (+) 1242 WP_194277712.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21246.12 Da        Isoelectric Point: 4.6747

>NTDB_id=616030 M6G09_RS11405 WP_031040345.1 2671054..2671659(-) (clpP) [Streptomyces sp. B146]
MPSAAGEPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPDKDIFLYINSPGGSITAGMAIYDTMQY
IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTIE
QITRDSDRDRWFDAFEAKEYGLVDDVITTAAGMPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=616030 M6G09_RS11405 WP_031040345.1 2671054..2671659(-) (clpP) [Streptomyces sp. B146]
ATGCCCTCAGCCGCCGGCGAGCCCTCCATCGGTGGCGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGACGACATTGCCAACAAGATCACCGCGCAGCTGCTGCTCCTTGCCGCCGATCCGG
ACAAGGACATCTTCCTGTACATCAACAGCCCGGGCGGTTCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTAC
ATCAAGAACGACGTGGTGACGATCGCCATGGGTCTCGCGGCCTCCATGGGGCAGTTCCTGCTCAGCGCGGGCACCCCCGG
CAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGCCTCGCCGGTTCGGCCTCGGACATCA
AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTCACCTCGCAGCACACCGGCCAGACGATCGAG
CAGATCACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCCTTCGAGGCCAAGGAGTACGGCCTCGTCGACGACGTGAT
CACCACGGCCGCCGGCATGCCGGGCGGCGGCGGTACGGGCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

58.14

85.572

0.498
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.297

90.547

0.483
  clpP Lactococcus lactis subsp. cremoris KW2

52.174

91.542

0.478
  clpP Streptococcus mutans UA159

54.913

86.07

0.473
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.63

91.542

0.473
  clpP Streptococcus pyogenes JRS4

52.023

86.07

0.448
  clpP Streptococcus pyogenes MGAS315

52.023

86.07

0.448
  clpP Streptococcus thermophilus LMG 18311

50.857

87.065

0.443
  clpP Streptococcus thermophilus LMD-9

50.857

87.065

0.443
  clpP Streptococcus pneumoniae Rx1

49.711

86.07

0.428
  clpP Streptococcus pneumoniae D39

49.711

86.07

0.428
  clpP Streptococcus pneumoniae R6

49.711

86.07

0.428
  clpP Streptococcus pneumoniae TIGR4

49.711

86.07

0.428