Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   M6G09_RS11400 Genome accession   NZ_CP102359
Coordinates   2670290..2671003 (-) Length   237 a.a.
NCBI ID   WP_031040348.1    Uniprot ID   -
Organism   Streptomyces sp. B146     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2665290..2676003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M6G09_RS11390 (M6G09_11420) - 2667736..2668707 (+) 972 WP_224300576.1 hypothetical protein -
  M6G09_RS11395 (M6G09_11425) clpX 2668812..2670098 (-) 1287 WP_031040350.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  M6G09_RS11400 (M6G09_11430) clpP 2670290..2671003 (-) 714 WP_031040348.1 ATP-dependent Clp protease proteolytic subunit Regulator
  M6G09_RS11405 (M6G09_11435) clpP 2671054..2671659 (-) 606 WP_031040345.1 ATP-dependent Clp protease proteolytic subunit Regulator
  M6G09_RS11410 (M6G09_11440) tig 2672029..2673456 (-) 1428 WP_195888290.1 trigger factor -
  M6G09_RS11425 (M6G09_11455) - 2674436..2674630 (-) 195 WP_031040337.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26300.73 Da        Isoelectric Point: 4.6617

>NTDB_id=616029 M6G09_RS11400 WP_031040348.1 2670290..2671003(-) (clpP) [Streptomyces sp. B146]
MNDFPGSGLYDRMHDAQDTRGAASQGRYTGPQAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVM
AQLLCLESMDPDRDISIYINSPGGSFTALTAIYDTMQYVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQP
YSETGRGQVSDLEIAANEILRMRTQLEDMLAKHSTTPVEKIREDIERDKILTAEDTLAYGLIDQIITTRKMDNSSLR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=616029 M6G09_RS11400 WP_031040348.1 2670290..2671003(-) (clpP) [Streptomyces sp. B146]
GTGAACGACTTCCCCGGCAGCGGCCTGTACGACCGCATGCACGACGCCCAGGACACGCGTGGCGCCGCCTCCCAGGGCCG
CTACACCGGCCCGCAGGCCGAATCCCGCTACGTCATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACG
ACCCGTACGCGAAGCTTTTCGAGGAGCGCGTGATCTTCCTCGGCGTCCAGATCGACGACGCCTCCGCCAACGACGTCATG
GCGCAGCTGCTGTGCCTGGAGTCGATGGATCCGGACCGGGACATCTCGATCTACATCAACAGCCCCGGCGGCTCCTTCAC
GGCGCTCACGGCCATCTACGACACGATGCAGTACGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCCGCCTCCG
CCGCCGCCGTCCTGCTGGCCGCCGGCACGCCGGGCAAGCGCATGGCGCTGCCGAACGCCCGCGTCCTGATCCACCAGCCG
TACAGCGAGACCGGCCGCGGCCAGGTCTCCGACCTGGAGATCGCCGCCAACGAGATCCTGCGGATGCGCACGCAGCTGGA
GGACATGCTGGCCAAGCACTCCACCACGCCGGTCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCG
AGGACACCCTGGCCTACGGCCTGATCGACCAGATCATCACCACCCGGAAGATGGACAACTCCTCTCTCCGCTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(48-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

80.169

0.414
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.064

79.325

0.405
  clpP Streptococcus pyogenes MGAS315

45.274

84.81

0.384
  clpP Streptococcus pyogenes JRS4

45.274

84.81

0.384
  clpP Streptococcus mutans UA159

44.39

86.498

0.384
  clpP Lactococcus lactis subsp. cremoris KW2

44.554

85.232

0.38
  clpP Streptococcus thermophilus LMD-9

45.641

82.278

0.376
  clpP Streptococcus thermophilus LMG 18311

45.641

82.278

0.376
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.564

85.232

0.371
  clpP Streptococcus pneumoniae Rx1

44.388

82.7

0.367
  clpP Streptococcus pneumoniae D39

44.388

82.7

0.367
  clpP Streptococcus pneumoniae R6

44.388

82.7

0.367
  clpP Streptococcus pneumoniae TIGR4

44.388

82.7

0.367